New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 34173 =74 (1.250)9 (0.160) 5/248 NT 12.0% coding (462/480 nt) orfX hypothetical protein OrfX
?CP000730 = 57858 62 (1.100)intergenic (+304/+613) USA300HOU_0048/USA300HOU_0049 hypothetical membrane protein/hypothetical protein

CAACTGTATTAGTTTAATCAGAAGACGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAACTGCTTTTT  >  CP000730/57718‑57998
                                                                                                                                            |                                                                                                                                            
caACTGTATTAGTTTAATCAGAAGACGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGc                                                                                                                                              >  1:111522/1‑141 (MQ=255)
       aTTAGTTTAATCAGAAGACGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCg                                                                                                                                       <  2:369606/141‑1 (MQ=255)
         tAGTTTAATCAGAAGACGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTa                                                                                                                                     >  2:605181/1‑141 (MQ=255)
                 tCAGAAGACGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTCTTTTTCCAAACCCGCATCATTAACTGATAAGCAGAAGCGTATCACAAAt                                                                                                                             >  1:645568/1‑141 (MQ=255)
                    gaagaCGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCagaagcatatcataaatgat                                                                                                                          <  1:281766‑M2/141‑21 (MQ=255)
                     aagaCGTGTCTAGTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTTTTCTTCTATAACTTTCTGTAGTTATTTTTCAAAAACCGAATCATTAACTGATAAGCAGACGCGTATCACAAATaaaa                                                                                                                         >  2:519324/1‑141 (MQ=255)
                      agaCGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAAc                                                                                                                        <  2:96304/141‑1 (MQ=255)
                       gaCGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACt                                                                                                                       >  2:530852/1‑141 (MQ=255)
                             tCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTaaaaaa                                                                                                                 <  1:42330/141‑1 (MQ=255)
                              cTACTTTGTAAGCTTCTAAGAACTTATTCTATGATATAGCGTTGGAGTTTTGTTGTTCTTCTATAACTTTCTGTCGTTATTTTTCAAAAACCGCATCATTGACTGATAAGCAGAAGCTTAGCACAAATAAAACTAAAAAAt                                                                                                                <  1:166729/141‑1 (MQ=255)
                               tACTTTGTAAGCATCTAAGAACTTATTATATGCTAAAGCCTTTGCGTTTTGTTGTTCTTCTATAAATTTCTGTAATAAAAAAAAAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATa                                                                                                               <  2:111522/141‑1 (MQ=37)
                                aCTTTGTAAGCTTCTAAGAACTTATTATGTGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAGTTTCTGTAGTTATTTTTCAAAAACCGCATCATTCACTGATAAACAACAGCGTATCATAGATAAAAcgattagatag                                                                                                              >  1:328064/1‑131 (MQ=255)
                                aCTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAg                                                                                                              <  2:273792/141‑1 (MQ=255)
                                 cTTTGTAAGCTTCTAAGAACTTAGTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCagaagcatatcataaatgatgcggttttttcag                                                                                                             >  2:162799‑M2/1‑108 (MQ=255)
                                           ttCTAAGAACTTACTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGtataa                                                                                                   <  1:50786/141‑1 (MQ=255)
                                              tAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATaaa                                                                                                                          <  2:670695/115‑1 (MQ=255)
                                              tAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATaaa                                                                                                                          >  1:670695/1‑115 (MQ=255)
                                                aGAACTTATTATATCATATAGCGTTTGCGTTTTGTTGTTCTTCTATATATTTCTGTAGTGTTTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGtataatataa                                                                                              <  2:345747/141‑1 (MQ=39)
                                                        ttatATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCCGAAGCGTATCACAAATAAAACTAAAAAAAAGATTGTGTATAATATAAaaggaagg                                                                                      >  1:364220/1‑141 (MQ=255)
                                                         tataTGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAggg                                                                                     >  2:423828/1‑141 (MQ=255)
                                                                tataGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCagaagcatatcataaatgatgcggttttttcagccgcttcataaagggattttgaatgtatcag                                                                              >  1:356618‑M2/1‑77 (MQ=255)
                                                                tataGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTTTATAATATAAAAGGAAGGGATTtata                                                                              <  2:431678/141‑1 (MQ=255)
                                                                tataGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTtata                                                                              >  1:318606/1‑141 (MQ=255)
                                                                tataGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGAGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTtata                                                                              <  1:427166/141‑1 (MQ=255)
                                                                aatagCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCagaagcatatcataaatgatgcggttttttcagccgcttcataaagggattttgaatgtatcag                                                                              >  1:79998‑M2/2‑77 (MQ=255)
                                                                 ataGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTatat                                                                             >  1:444349/1‑141 (MQ=255)
                                                                    gCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCATTTATTTCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTCTATAATATAAAAGGAAGGGATTTATATTaa                                                                          >  2:441145/1‑141 (MQ=255)
                                                                    gCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTaa                                                                          >  2:76903/1‑141 (MQ=255)
                                                                    gCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTaa                                                                          >  2:228792/1‑141 (MQ=255)
                                                                     cGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTGACTGATAAGCAGAAGCGTATCACAAATAAAAATAAAAAATCGGTTGTGTATAGTCTAGAAGAACGGGGTTAATATTaaa                                                                         >  2:29549/1‑141 (MQ=255)
                                                                      gTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTaaaa                                                                        >  1:265625/1‑141 (MQ=255)
                                                                       tttGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTGTCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAAt                                                                       >  2:174035/1‑141 (MQ=255)
                                                                        ttGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAAtt                                                                      >  1:543578/1‑141 (MQ=255)
                                                                           aGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTg                                                                   >  1:484129/1‑141 (MQ=255)
                                                                            gTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGa                                                                  >  2:27514/1‑141 (MQ=255)
                                                                            gTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGa                                                                  >  2:93571/1‑141 (MQ=255)
                                                                             ttttGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGaa                                                                 >  1:241175/1‑141 (MQ=255)
                                                                              tttGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGGTTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAAt                                                                >  2:193157/1‑141 (MQ=255)
                                                                               ttgttgTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAAtt                                                               >  1:6576/1‑141 (MQ=255)
                                                                                   tgttCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCagaagcatatcataaatgatgcggttttttcagccgcttcataaagggattttgaatgtatcagaacatatgaggtttatgtg                                                           >  2:269236‑M2/1‑58 (MQ=255)
                                                                                   tgttCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCagaagcatatcataaatgatgcggttttttcagccgcttcataaagggattttgaatgtatcagaacatatgaggtttatgtg                                                           >  1:94472‑M2/1‑58 (MQ=255)
                                                                                   tgttCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCagaagcatatcataaatgatgcggttttttcagccgcttcataaagggattttgaatgtatcagaacatatgaggtttatgtg                                                           >  1:494811‑M2/1‑58 (MQ=255)
                                                                                           tataAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATGTATATTAAAATTTTGAATTCAAAAATTTTTg                                                   >  1:45083/1‑141 (MQ=255)
                                                                                               aaTTTGTGTATTTATTTTTCAAAAACTGCATCATTAACTGATAAGCAAAATCGTATCACAAATAAAACTAAAAAATAGATTGTGTATTATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAg                                               <  2:425649/141‑1 (MQ=255)
                                                                                                 tttCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAggg                                             <  2:145679/141‑1 (MQ=255)
                                                                                                      gTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAACGGGAAGCt                                        >  2:206355/1‑141 (MQ=255)
                                                                                                       tAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGAAAGGGATTTATATTAAAATTTTAAATTCAAAAATTATTGAAAGGGAAGCTa                                       >  1:7965/1‑141 (MQ=255)
                                                                                                           tATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAGATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCtt                                   <  1:446939/141‑1 (MQ=255)
                                                                                                           tATTTTTCAAAAACCGCATAATTAATTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCtt                                   <  2:139194/141‑1 (MQ=255)
                                                                                                           tATCTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATCAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCtt                                   <  1:500264/141‑1 (MQ=255)
                                                                                                            aTTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTa                                  <  2:444349/141‑1 (MQ=255)
                                                                                                              ttttCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGa                                <  2:572618/141‑1 (MQ=255)
                                                                                                              ttttCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGGGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTTAAAGGTAAGCTACCTTAGa                                <  2:79027/141‑1 (MQ=255)
                                                                                                               tttCAAAACCCGCATCATTAACTGAGAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGaa                               <  2:52333/141‑1 (MQ=255)
                                                                                                               ttccAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGaa                               >  1:529596/4‑141 (MQ=255)
                                                                                                               aattaaaaaccgcATCATTAACCGATACGCagaagcatatcataaatgatgaggttttttcagccgcttcataaagggattttgaatgtatcagaacatatgaggtttatgtgaatggctgttatgtttttaagaagctta                               <  2:43339‑M2/137‑112 (MQ=255)
                                                                                                                 tCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGACAGGGAAGCTACCTTAGAAAt                             <  1:423828/141‑1 (MQ=255)
                                                                                                                 tCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAAt                             >  1:210655/1‑141 (MQ=255)
                                                                                                                 tCAAAAACCGAATACTTAGCTGATAAGCATAAGCATATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAAt                             <  2:95893/141‑1 (MQ=255)
                                                                                                                    aaaaCCGCATCATAAACTGATAAGCAGAAGCGTATCACAAAAAAAACAAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGa                          <  2:375203/141‑1 (MQ=255)
                                                                                                                     aaaCCGCATCATTAACTGATAAGCagaagcatatcataaatgatgcggttttttcagccgcttcataaagggattttgaatgtatcagaacatatgaggtttatgtgaattgctgttatgtttttaagaagcttatcataa                         <  2:534022‑M2/141‑118 (MQ=255)
                                                                                                                       aCCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATc                       <  1:428019/141‑1 (MQ=255)
                                                                                                                             tcatTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTAAGAAATTGAATCTATGGc                 >  2:367725/1‑141 (MQ=255)
                                                                                                                                ttAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCAc              <  2:373761/141‑1 (MQ=255)
                                                                                                                                 tAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACt             >  1:120888/1‑141 (MQ=255)
                                                                                                                                 tAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGGATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACt             <  1:169324/141‑1 (MQ=255)
                                                                                                                                  aaCTGATAAGCAGAAGGGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTa            <  2:581690/141‑1 (MQ=255)
                                                                                                                                  aaCTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTa            <  2:188387/141‑1 (MQ=255)
                                                                                                                                    gtGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAAc          <  2:67921/140‑1 (MQ=255)
                                                                                                                                    cTGATAAGCAGAAGGGTATCACAAATAAAACTACAAAATAGATTTTTTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAAc          <  1:128035/141‑1 (MQ=255)
                                                                                                                                    cTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAAc          <  1:221692/141‑1 (MQ=255)
                                                                                                                                    cTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAAc          <  1:333245/141‑1 (MQ=255)
                                                                                                                                    cTGATAAGCAGAAGCGTAGCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAAc          <  2:640046/141‑1 (MQ=255)
                                                                                                                                    atGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAAc          <  2:215150/140‑1 (MQ=255)
                                                                                                                                           gCAGAAGCGTATCACAAATAAAACTAAAAAAGAGGTTGTGTATAATATAAAAGGAAGGGATGTATATTTAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAACTGCtttt   >  2:283792/1‑141 (MQ=255)
                                                                                                                                           gCAGAAGCGGATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAACTGCtttt   <  1:174035/141‑1 (MQ=255)
                                                                                                                                            cagaagcatatcataaatgatgcggttttttcagccgcttcataaagggattttgaatgtatcagaacatatgaggtttatgtgaattgctgttatgtttttaagaagcttatcataagtaatgaggttcatgatttttga  <  2:148793‑M2/141‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                            
CAACTGTATTAGTTTAATCAGAAGACGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAACTGCTTTTT  >  CP000730/57718‑57998

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.