New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 1179979 =89 (0.970)6 (0.070) 3/252 9.5 6.9% intergenic (+235/+70) USA300HOU_1109/ydiA hypothetical protein/TDT family tellurite/dicarboxylate transporter
?CP000730 1180015 = 83 (1.000)intergenic (+271/+34) USA300HOU_1109/ydiA hypothetical protein/TDT family tellurite/dicarboxylate transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTACTTAGAGTCTTTATAGGATATCTTCACTTCTTTTTAAAAAAGGAAAAACAAGATAAATTTCTTCGTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTTGCCTCTTTTTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1180132‑1179979
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcctctttttagtTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCTAATAACA  >  CP000730/1180015‑1180152
                                                                                                                                                                                                                                                                                                    
GTACTTAGAGTCTTTATAGGATATCTTCACTTCTTTTTAAAATACAGATTACAAGATAAATTTCTTCGTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTT                                                                                                                                                         >  1:524873/1‑141
GTACTTAGAGTCTTTATAGGATACCTTCACTTCTTTTTACAAAAGGAAAAACAAGATAAATTTCTTCGTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTT                                                                                                                                                         >  1:282064/1‑141
 taaTTAGAGTCTTTATAGGATAACTTCACTTCTTTTTAAAAAAGGAAAAACAAGATAAATTTCTTCGTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTTG                                                                                                                                                        <  2:950318/138‑1
  aaTTAGATGCTTTATAGGATATTTTCACTTCTTTTTAAAAAAGGAAAAACAAGATAAATTTCTTCGTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTTGC                                                                                                                                                       <  1:180350/139‑1
   CTTAGAGTCTTTATAGGATATCTTCACTTCTTTTTAAAAAAGGAAAAACAAGATAAATTTCTTCGTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTTGCC                                                                                                                                                      >  2:769914/1‑141
   CTTAGAGTCTTTATAGGATATCTTCACTTCTTTTTAAAAAAGGAAAAACAAGATAAATTTCTTCGTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTTGCC                                                                                                                                                      >  1:144360/1‑141
   CTTAGAGTCTTTATAGGATATCTTCACTTCTTTTTAAAAAAGGAAAAACAAGATAAATTTCTTCGTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTTGCC                                                                                                                                                      <  1:452439/141‑1
      AGAGTCTTTATAGGATTGCTTCACTTCTCTTTCAAAAAGGAAAAACAAGATAAATTTCTTCGTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTTGCCTCT                                                                                                                                                   <  1:398005/141‑1
      AGAGTCTTTATAGGATATCTTCACTTCTTTTTAAAAAAGGAAAAACAAGATAAATTTCTTCGTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAATAGGCAGGTAATCTTGCCTCT                                                                                                                                                   <  1:602292/141‑1
      AGAGTCTTTATAGGATATCTTAACTTCTTTTTAAAAAAGGAAAAACAAGATAAATTTCTTCGTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTTGCCTCT                                                                                                                                                   <  1:818551/141‑1
                                                      GATAAATTTCTTCGTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGA                                                                                                   >  2:714516/1‑141
                                                                   GTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTTTTGGTAATTGTGTTTCTGTGATGCATTACGAA                                                                                      >  1:123474/1‑141
                                                                   GTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAA                                                                                      >  1:750359/1‑141
                                                                   GTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGATAATAGTTTTACTAAGACGCATTAAGAA                                                                                      >  1:73708/1‑141
                                                                   GTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTTGCCTATTTTTAGTTATTAAATATATGTGTTAATTCTTGGTTATATGGTTACTGAGACGCGTTATGAg                                                                                      >  1:123442/1‑140
                                                                                                                               AGGCAGGTAATCTTGCCTCTTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAA                          >  1:887571/1‑141
                                                                                                                                                  TTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCTAA       <  2:123442/141‑1
                                                                                                                                                  TTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCTAA       <  2:123474/141‑1
                                                                                                                                                  TTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCTAA       <  2:750359/141‑1
                                                                                                                                                  TTTTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCTAA       <  2:73708/141‑1
                                                                                                                                                    TTTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCTAATA     <  1:638660/141‑1
                                                                                                                                                     TTAGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTAAAAAAAAAAAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCTAATAA    <  2:366752/141‑1
                                                                                                                                                       AGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGCGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAGGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCTAATAACA  >  1:38408/1‑141
                                                                                                                                                       AGTTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAGGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCTAATAACA  >  1:38160/1‑141
                                                                                                                                                                                                                                                                                                    
GTACTTAGAGTCTTTATAGGATATCTTCACTTCTTTTTAAAAAAGGAAAAACAAGATAAATTTCTTCGTAATGCGTCTCAGTAACACTATTACCAAGAATTAACACGTATATTTAATAACTAAAAAGAGGCAGGTAATCTTGCCTCTTTTTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1180132‑1179979
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcctctttttagtTATTAAATATACGTGTTAATTCTTGGTAATAGTGTTACTGAGACGCATTACGAAGAAATTTATCTTGTTTTTCCTTTTTTAAAAAGAAGTGAAGATATCCTATAAAGACTCTAAGTACTATTACAGTGGCTAATAACA  >  CP000730/1180015‑1180152

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.