New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 512620 =102 (1.110)68 (1.040)
+TTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAA
39/200 0.2 48.4% intergenic (+688/‑173) recR/rrs1 recombination protein RecR/16S ribosomal RNA
?CP000730 1998278 = NA (NA)intergenic (‑6/+5) USA300HOU_t0050/rrf4 tRNA‑Val/5S ribosomal RNA

Only 100 of 105 total aligned reads displayed.

CTGATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTTATAC  >  CP000730/1998139‑1998418
                                                                                                                                           |                                                                                                                                             
cTGATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTATCCGCTTTaa                                                                                                                                              >  2:920012/1‑141 (MQ=25)
cTGATTACAAGTCAGTTGCAATGGCTATTAAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTaa                                                                                                                                              >  2:457588/1‑141 (MQ=11)
         aGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTg                                                                                                                                     <  2:134900/141‑1 (MQ=255)
         aGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATCACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTg                                                                                                                                     <  1:513100/141‑1 (MQ=255)
           tCAGTTGCTCTACCAATTGCGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGc                                                                                                                                   <  2:805455/141‑1 (MQ=255)
              gTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCTCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAAc                                                                                                                                >  1:245755/1‑141 (MQ=255)
              gTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAAc                                                                                                                                >  2:750220/1‑141 (MQ=255)
              gTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCGTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAAc                                                                                                                                >  1:473509/1‑141 (MQ=255)
                 gCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGtt                                                                                                                             >  1:941311/1‑141 (MQ=255)
                 gCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGtt                                                                                                                             >  1:300408/1‑141 (MQ=255)
                  ctctACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTc                                                                                                                           <  2:37191/141‑1 (MQ=255)
                       ccAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTActc                                                                                                                      >  2:432507/1‑141 (MQ=255)
                              aGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGATGAGCTAATTCTCCGATGTAAAACTGCCTGGCAACGTTCTACTCTAGCGGa                                                                                                               >  2:372541/1‑141 (MQ=255)
                               gCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTACCGGaa                                                                                                              >  2:217085/1‑141 (MQ=255)
                                 tAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACg                                                                                                            <  2:716816/141‑1 (MQ=255)
                                  aGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCTGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGt                                                                                                           >  2:290325/1‑141 (MQ=255)
                                  aGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGAATTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGt                                                                                                           >  2:2514/1‑141 (MQ=255)
                                   ggCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTa                                                                                                          >  1:935675/1‑141 (MQ=255)
                                   ggCCGGCAATATGTAAGAATAAATGGTGGAGAATGACAGCATCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAACGGAAAGTa                                                                                                          >  2:653071/1‑141 (MQ=17)
                                   ggCCGGCAAGATGGAAGAAGAAATCGTGGAGAATGACGGGTTCGAACCGCTGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTa                                                                                                          >  2:732078/1‑141 (MQ=17)
                                    gCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGACTTAAAACTGCCTGGCAACGTTGTACTCCAGCGGAACGTaa                                                                                                         >  2:3866/1‑141 (MQ=255)
                                           atatGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGAc                                                                                                  <  2:928035/141‑1 (MQ=255)
                                             atGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACtc                                                                                                >  1:460861/1‑140 (MQ=255)
                                             atGTAACGATAAATGGTCGAGAATGACGGGTCCGAACCGCCGACCCTCTGGTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCGCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTa                                                                                                <  2:678158/141‑1 (MQ=17)
                                               gTAAGAATAAATGGTGGAGAATGACGGGTTCGATCCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAAGTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCCGAACGTAACTTCGACTAcc                                                                                              <  2:556639/141‑1 (MQ=255)
                                               gTAAGAATAAATGGTGGAGAATGACGGGGTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGCACGTAAGTTCGACTAcc                                                                                              >  2:979028/1‑141 (MQ=255)
                                                taggAATAAATGGTGGAGAATGACGGGTTCGACCCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCa                                                                                             <  2:216867/138‑1 (MQ=255)
                                                tAAGAATACCTGGTGGAGAATGACGGGTTGGAACCGCCCAACCTCTCCTTGTAAGGCAGATGCTCTCCCAGCTGAGTTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCa                                                                                             <  2:482112/141‑1 (MQ=17)
                                                tAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCACCGTTCTACTCTAGCGGAACGTAAGTTCGACTCCCa                                                                                             >  1:349760/1‑141 (MQ=255)
                                                tAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCa                                                                                             <  2:831068/141‑1 (MQ=255)
                                                tAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCa                                                                                             <  1:741472/141‑1 (MQ=255)
                                                tAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTATACTCTAGCGGAACGTAAGTTCGACTACCa                                                                                             <  1:321889/141‑1 (MQ=255)
                                                      tAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACg                                                                                       <  1:26472/141‑1 (MQ=255)
                                                      tAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCCACg                                                                                       >  1:336770/1‑141 (MQ=255)
                                                       aaaTGGTGGAGAATGACGGGTTCGAACCGCCGCACATCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGCCTCCCATCGACGc                                                                                      >  1:386383/1‑141 (MQ=14)
                                                       aaaTGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGc                                                                                      >  1:743850/1‑141 (MQ=255)
                                                        aaTGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGGAAGTTCGACTACCATCGACGcc                                                                                     >  2:661768/1‑140 (MQ=255)
                                                         ggtggagagaATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAACCTGCCTGCCAACGATCCTCTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTa                                                                                    <  2:653122/135‑1 (MQ=14)
                                                         aTGGGGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTATGTTCGACTACCATCGACGCTa                                                                                    <  1:517978/141‑1 (MQ=255)
                                                           ggtggAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAGCTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAg                                                                                  <  1:277592/141‑1 (MQ=255)
                                                           ggtggAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAGCTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAg                                                                                  <  2:333259/141‑1 (MQ=255)
                                                            gtggAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTATCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTACAGCGGAACGTAAGTTCGACTACCATccaacctacgg                                                                                 >  2:166905/1‑131 (MQ=14)
                                                            gtggAGAATGACGGGTTCGAACCGCAGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCACCGTTCTACTCTAGCGGAACGTAAGTTCGACTACAATCGACACTAAgg                                                                                 >  1:38335/1‑141 (MQ=255)
                                                             tggAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTCCCATCGACGCTAAGGa                                                                                >  1:896781/1‑141 (MQ=255)
                                                             tggAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGa                                                                                >  1:896759/1‑141 (MQ=255)
                                                                agaATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCt                                                                             <  1:4591/141‑1 (MQ=255)
                                                                   acgACGGGTTCGAACCGCCGACCCTCTGCGTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCGCCGATTTAAAACTGCCTGGCAACGTTCTAGTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTaa                                                                          <  2:634233/139‑1 (MQ=255)
                                                                    tGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAAc                                                                         >  1:624405/1‑141 (MQ=255)
                                                                    tGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAAc                                                                         >  1:595403/1‑141 (MQ=255)
                                                                      aCGGGTTGGAACCGCCGACCCTCTCCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACtt                                                                       >  1:632208/1‑141 (MQ=255)
                                                                      aCGGGTTGGAACCGCCGACCCTCTACTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACtt                                                                       >  1:632231/1‑141 (MQ=255)
                                                                      aCGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGCGCTTAACtt                                                                       >  1:616125/1‑141 (MQ=255)
                                                                      aCGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCACTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACtt                                                                       >  1:680730/1‑141 (MQ=255)
                                                                       cGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACCACCATCGCCGCTAAGGAGCTAAACTTc                                                                      >  1:307445/1‑141 (MQ=255)
                                                                          gTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCtgt                                                                   >  1:533426/1‑141 (MQ=255)
                                                                           ttCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTATAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCtgtg                                                                  >  1:83065/1‑141 (MQ=255)
                                                                             cGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGtt                                                                >  1:466235/1‑141 (MQ=255)
                                                                                    ccgACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATg                                                         <  2:763100/141‑1 (MQ=255)
                                                                                      gACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAATGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATggg                                                       <  1:662570/141‑1 (MQ=255)
                                                                                      cccccTCTGCTTGTAAGGCCGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATggg                                                       <  1:643468/139‑1 (MQ=255)
                                                                                      caCCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACCGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATggg                                                       <  1:258899/140‑1 (MQ=255)
                                                                                       aCCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGa                                                      <  2:473509/141‑1 (MQ=255)
                                                                                        cccTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGaa                                                     >  2:755922/1‑141 (MQ=255)
                                                                                         ccTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAAc                                                    >  1:662540/1‑141 (MQ=255)
                                                                                         ccTCGGCTTGTAAGGCAGATGCTCGCCCAGCTGAGCTAATTCTACGCTTAAGGTCATTCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAAc                                                    <  1:276622/141‑1 (MQ=11)
                                                                                            ccgCTTGTAAGTCATATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGACAGCATCTTTGCGACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAgg                                                 <  1:473248/139‑1 (MQ=14)
                                                                                                ttGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGtgtg                                             <  1:755922/141‑1 (MQ=255)
                                                                                                  gTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAc                                           <  2:872568/141‑1 (MQ=255)
                                                                                                    aaGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAGCTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAcct                                         <  1:788338/141‑1 (MQ=255)
                                                                                                        cAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCCTGGGAACAGGTGTGACCTCCtt                                     >  2:215656/1‑141 (MQ=255)
                                                                                                             gCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCtat                                >  2:570862/1‑141 (MQ=255)
                                                                                                               tctcCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAg                              >  1:405658/1‑141 (MQ=255)
                                                                                                               tctcCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACCTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAg                              <  2:26332/141‑1 (MQ=255)
                                                                                                               tctcCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTATAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAg                              >  1:188475/1‑141 (MQ=255)
                                                                                                               tctcCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGGTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAg                              >  1:437335/1‑141 (MQ=255)
                                                                                                               cctcCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCGACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCGTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAg                              <  1:791548/140‑1 (MQ=255)
                                                                                                                   ccAGCTGTGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCAc                          <  1:774418/141‑1 (MQ=255)
                                                                                                                     aGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCa                        <  2:832404/141‑1 (MQ=255)
                                                                                                                      gCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAATGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAg                       >  1:660366/1‑141 (MQ=255)
                                                                                                                      gCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAg                       >  1:851930/1‑141 (MQ=255)
                                                                                                                      gCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAATTCGACTACCATAGACGCTCGGGAGCCTAGCTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATATACACCAg                       >  2:154940/1‑141 (MQ=14)
                                                                                                                       cTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGa                      >  2:103919/1‑141 (MQ=255)
                                                                                                                         gAGCTAAATCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACa                    <  1:151022/141‑1 (MQ=255)
                                                                                                                          ggCTAATTCTCCGATTGAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACat                   <  1:2514/140‑1 (MQ=255)
                                                                                                                          accTAATTCTACGATTGAAAACCGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACat                   <  1:290325/139‑1 (MQ=255)
                                                                                                                            cTAATTCTCTAATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAACTCCTTGCTATAGTCACCAGACagat                 >  1:729461/1‑141 (MQ=255)
                                                                                                                            cTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACatat                 >  1:765197/1‑141 (MQ=255)
                                                                                                                            cTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACatat                 >  1:838618/1‑141 (MQ=255)
                                                                                                                             taattgggcGATCTAAAACTTCCAGGCAACGTTCTACTCGACGGGAACTTAAGTTCGATGACCAGCGACGCGAAGGAGCTTAACGTCTGTGCTCGGCATGGGAATATGTGTGACCTCCTTGCTATAGTCACCAGACATATg                <  2:507879/133‑1 (MQ=11)
                                                                                                                             tAATTGTCCGTTTTAAAACTGCCTGGCAACGTTCTCCTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGTAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATg                <  2:150063/141‑1 (MQ=255)
                                                                                                                             tAATTGTCCGATTTACAACGGCCCCGCAACTTTCTACTCTAACGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGTAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATg                <  2:644097/141‑1 (MQ=11)
                                                                                                                               aTTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAATGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCGATAGTCACCAGACATATGaa              <  1:601124/141‑1 (MQ=255)
                                                                                                                                 tctcCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATg            <  2:901054/141‑1 (MQ=255)
                                                                                                                                 tctcCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAATCACCAGACATATGACTg            >  2:526447/1‑141 (MQ=255)
                                                                                                                                     cGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTGTAGTCACCAGGCATATGAATGTCAt        >  2:3684/1‑141 (MQ=255)
                                                                                                                                     cGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAAt        >  2:632041/1‑141 (MQ=38)
                                                                                                                                      gATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAGCTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGCCATATGAATCTAAtt       >  2:326353/1‑141 (MQ=255)
                                                                                                                                        tttAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTta     >  1:680687/1‑141 (MQ=35)
                                                                                                                                        tttAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGGGACCTCCTTGCTATAGTCACCAGACATATGAATGCaactag     >  1:222227/1‑137 (MQ=255)
                                                                                                                                           aaaaCTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTTATAc  <  1:42588/141‑1 (MQ=33)
                                                                                                                                           |                                                                                                                                             
CTGATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTTATAC  >  CP000730/1998139‑1998418

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.