New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	76096 =	174 (1.380)	8 (0.070)	4/278	6.8	4.6%	intergenic (+154/‑980)	USA300HOU_0072/USA300HOU_0075	universal stress protein/lysophospholipase
	?	CP000730	76124 =	168 (1.410)					intergenic (+182/‑952)	USA300HOU_0072/USA300HOU_0075	universal stress protein/lysophospholipase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACTCCTTTTTGTTAAAATTATACTATAGATTCAACTTTGCAACAGAACCTATATTTTGCTATAATTATTAAATTAATTGCCTTTGTGTTAGTATTCCCTGGATTACTAACAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/76252‑76096 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tactaacacAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTG  >  CP000730/76124‑76269                                                                                                                                                                                                                                                                                                                 ACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACTCCTTTTTGTTAAAATTATACTATAGATTCAACTTTGCAACAGAACCTATATTTTGCTATAATTATTAAATTAATTGCCTTTGTGTTAGTATTCCCTGGATT                                                                                                                                                            >  2:1335821/1‑149  CATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACTCCTTTTTGTTAAAATTATACTATAGATTCAACTTTGCAACAGAACCTATATTTTGCTATAATTATTAAATTAATTGCCTTTGTGTTAGTATTCCCTGGATTt                                                                                                                                                           >  1:722043/1‑148  CATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACTCCTTTTTGTTAAAATTATACTATAGATTCAACTTTGCAACAGAACCTATATTTTGCTATAATTATTAAATTAATTGCCTTTGTGTTAGTATTCCCTGGATTA                                                                                                                                                           >  1:1257923/1‑149  CATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACTCCTTTTTGTTAAAATTATACTATAGATTCAACTTTGCAACAGAACCTATATTTTGCTATAATTATTAAATTAATTGCCTTTGTGTTAGTATTCCCTGGATTA                                                                                                                                                           <  1:876396/149‑1  CATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACTCCTTTTTGTTAAAATTATACTATAGATTCAACTTTGCAACAGAACCTATATTTTGCTATAATTATTAAATTAATTGCCGTTGTGTTAGTATTCCCTGGATTA                                                                                                                                                           <  1:994460/149‑1   ATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACTCCTTTTTGTTAAAATTATACTATAGATTCAACTTTGCAACAGAACCTATATTTTGCTATAATTATTAAATTAATTGCCTTTGTGTTAGTATTCCCTGGATTAC                                                                                                                                                          <  2:201842/149‑1    TCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACTCCTTTTTGTTAAAATTATACTATAGATTCAACTTTGCAACAGAACCTATATTTTGCTATAATTATTAAATTAATTGCCTTTGTGTTAGTATTCCCTGGATTACT                                                                                                                                                         >  2:535707/1‑149     cgTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACTCCTTTTTGTTAAAATTATACTATAGATTCAACTTTGCAACAGAACCTATATTTTGCTATAATTATTAAATTAATTGCCTTTGTGTTAGTATTCCCTGGATTACTA                                                                                                                                                        <  1:1343483/147‑1     CCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACTCCTTTTTGTTAAAATTATACTATAGATTCAACTTTGCAACAGAACCTATATTTTGCTATAATTATTAAATTAATTGCCTTTGTGTTAGTATTCCCTGGATTACTA                                                                                                                                                        <  1:510807/149‑1     CCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACTCCTTTTTGTTAAAATTATACTATAGATTCAACTTTGCAACAGAACCTATATTTTGCTATAATTATTAAATTAATTGCCTTTATGTTAGTATTCCCTGGATTACTA                                                                                                                                                        <  1:995920/149‑1     CCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACCCCTTTTTGTTAAAATTATACTATAGATTCAACTTTGCAACAGAACCTATATTTTGCTATAATTATTAAATTAATTGCCTTTGTGTTAGTATTCCCTGGATTACTA                                                                                                                                                        <  1:599911/149‑1     CCTTGCTAAATTGTTTATATCTGAAATAGTTCATACAGAATACTCCTTTTTGTTAAAATTATACTATAGATTCAACTTTGCAACAGAACCTATATTTTGCTATAATTATTAAATTAATTGCCTTTGTGTTAGTATTCCCTGGATTACTA                                                                                                                                                        <  1:1343482/149‑1       TTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACTCCTTTTTTTTTTTTTTTTACTATAGATACAACTTTGCAACAGAACCTATATTTTGCTATAATTATTAAATTAATTTCTTTTGTCTTATTATTCCCTGGTTTACTAAa                                                                                                                                                      >  2:775384/1‑148       TTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACTCCTTTTTGTTAAAATTATACTATAGATTCAACTTTGCAACAGAACCTATATTTTGCTATAATTATTAAATTAATTGCCTTTGTGTTAGTATTCCCTGGATTACTAAC                                                                                                                                                      <  2:910509/149‑1                                                                                       ACAGAACCTATATTTTGCTATAATTATTAAATTAATTGCCTTTGTGTTAGTATTCCCTGGATTACTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAA                                                                      >  1:397820/1‑149                                                                                                                       TAATTGCCTTTGTGTTGGTATTCCCTGGATTACTAACACAAAGGCAATTAATTTAATAGTTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGACTTCTGTATGAACTATTTCAGATATA                                      >  2:990834/1‑149                                                                                                                       TAATTGCCTTTGTGTTAGTATTCCCTGGATTACTAACACAAAGGCAATTAATTTAGTAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATA                                      >  2:1009112/1‑149                                                                                                                       TAATTGCCTTTGTGTTAGTATTCCCTGGATTACTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATA                                      >  2:316437/1‑149                                                                                                                                     TTAGTATTCCCTGGATTACTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTATCAAAAATGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAG                        >  1:701592/1‑149                                                                                                                                     TTAGTATTCCCTGGATTACTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAG                        >  1:10442/1‑149                                                                                                                                      TAGTATTCCCTGGATTACTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGG                       >  1:843958/1‑149                                                                                                                                      TAGTATTCCCTGGATTACTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGG                       >  1:1194501/1‑149                                                                                                                                                       aTAACACAAAGGAAATTAATTTAAGAATTATAGCAAAATATAGGTTCTGCTGCAAAGTTGAATCTATAGTAAAAAAAAAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCC      <  2:861325/148‑1                                                                                                                                                       aTAACACAAAAGCAAATAATTTAATAAATATAGAAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTAAAAAAAAAAAAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCC      <  2:1192571/148‑1                                                                                                                                                       CTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCC      >  1:273712/1‑149                                                                                                                                                       CTAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCC      >  1:934868/1‑149                                                                                                                                                        TAACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATTTTATCACTGTCGCCt     >  1:1001843/1‑148                                                                                                                                                          ACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAATGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTT   <  1:63038/149‑1                                                                                                                                                          ACACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTT   <  1:1106045/149‑1                                                                                                                                                           aACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTG  <  1:1064796/148‑1                                                                                                                                                           aACAAAGGCAATTAACTTAATAAGTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTCTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTG  <  1:1030134/148‑1                                                                                                                                                           CACAAAGGCGAGTAATTTAATACTTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTG  <  1:303573/149‑1                                                                                                                                                           CACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCGGTTG  >  1:525897/1‑149                                                                                                                                                           CACAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTG  <  1:960335/149‑1                                                                                                                                                                                                                                                                                                                 ACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATACAGAAGACTCCTTTTTGTTAAAATTATACTATAGATTCAACTTTGCAACAGAACCTATATTTTGCTATAATTATTAAATTAATTGCCTTTGTGTTAGTATTCCCTGGATTACTAACAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/76252‑76096 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tactaacacAAAGGCAATTAATTTAATAATTATAGCAAAATATAGGTTCTGTTGCAAAGTTGAATCTATAGTATAATTTTAACAAAAAGGAGTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTTG  >  CP000730/76124‑76269

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.