| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 801002 = | 117 (0.930) | 8 (0.070) +TTTTTTTTTTCAG |
4/270 | 6.7 | 6.4% | intergenic (+136/‑215) | hisC1/USA300HOU_0748 | histidinol‑phosphate transaminase/hypothetical protein |
| ? | CP000730 | = 848580 | 138 (1.090) | coding (101/312 nt) | USA300HOU_0793 | hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATTGAGCTTGAGACATAAATCAATGTTCAATGCTCTACAAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/801095‑801002‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGTGGGCCCCAACATAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGACGAAAAGTCAG < CP000730/848580‑848435 ||||||||||||| gaTGAGCTTGAGACATAAATCAATGTTCAATGCTCTACAAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTTTTTTTTTTTCAGGGGGCACAACATAGAGAATTTCGAAAAGAATTTCTACAGGCA > 2:858947/3‑149 AAATCAATGTTCTATGCTCTACGATGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTTTTTTTTTTTTTGGGGCCCCAACACAGAGAATTTCGACAATAAATTCTACAGGCAATGCGAGTTGGGGTGT > 2:1194689/1‑149 AAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTCTTTTTTTGTCAGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTCGGCTGTCGGCCCCAACAAAGAGCAATTG > 2:1137053/1‑149 GTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTTTTTTTTTGTCAGGGGCCGAAACACAGAGAATTTCGAAAAGATTTTCTGCAGGCAAAGCGAGGTGGGGTGAGGGCCCCAACACAGAGgctgaggga > 2:46429/1‑140 TTATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTTTTTTTTTTTCAGGGGCCGCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAAAGCGAGGTGGGGCG‑GGGCCCCAACAAAGAGAAATTGGATgc > 2:355530/1‑147 TGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTTTTTTTTTTTTCAGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGTGGGCCCCAACAAAGAGAAATTGGATTCACAtt > 2:466277/1‑147 GCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTTTTTTTTTTTCAGGGACCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGCG‑GGGCCCCAACAAGGAGAAATTGGATTACCAATTTC > 2:934050/1‑149 CGAAAATGCGCTTGTAACAAGCTTTTTTTTTTTTTTTTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGGG‑ATGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGT > 2:685135/1‑149 ggGGGGCCCCAACACCGAGAATGTCGAAAAGATATGCTACAGGCAATGCGAGTTGGGGTGTGGGCCCCAACATAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGACGAAAAGTCAG < 2:565905/147‑1 ||||||||||||| ATTGAGCTTGAGACATAAATCAATGTTCAATGCTCTACAAAGTTATATTGGCAGTAGTTGACTGAACGAAAATGCGCTTGTAACAAGCTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/801095‑801002‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGTGGGCCCCAACATAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGACGAAAAGTCAG < CP000730/848580‑848435 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |