BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	801002 =	117 (0.930)	8 (0.070) +TTTTTTTTTTCAG	4/270	6.7	6.4%	intergenic (+136/‑215)	hisC1/USA300HOU_0748	histidinol‑phosphate transaminase/hypothetical protein
*	?	CP000730	= 848580	138 (1.090)	8 (0.070) +TTTTTTTTTTCAG	4/270	6.7	6.4%	coding (101/312 nt)	USA300HOU_0793	hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 141 total aligned reads displayed.

AAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGAT  >  CP000730/848432‑848727

aaGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGCATTTCTTTTCGAAATTCCCTGTGTTGGGGccc                                                                                                                                                      >  1:6669/1‑149 (MQ=255)

  gCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCTCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAAGTCTCTGTGTTGGGGCCcac                                                                                                                                                    >  1:858125/1‑149 (MQ=255)

  gCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAGCTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCcac                                                                                                                                                    >  1:543696/1‑149 (MQ=255)

  gCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCcac                                                                                                                                                    >  2:335019/1‑149 (MQ=255)

   cTGACTTTTCGTCAGCTTCTGTGTTTGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGGAATTCTCTGTGTTGGGGCCcaca                                                                                                                                                   >  2:557225/1‑149 (MQ=255)

   cTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGCATATCTTTTCGACATTCTCGGTGTTGGGGcccccc                                                                                                                                                   >  2:565905/1‑146 (MQ=18)

   cTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCcaca                                                                                                                                                   >  1:789964/1‑149 (MQ=255)

   cTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTACCTGTGTTGGGGCCcacc                                                                                                                                                   >  2:556967/1‑148 (MQ=255)

              tCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACCCCC‑CAACTCGc                                                                                                                                       >  1:1070696/1‑149 (MQ=255)

              tCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGc                                                                                                                                       >  1:175621/1‑149 (MQ=255)

              tCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCAGTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGc                                                                                                                                       <  1:479743/149‑1 (MQ=255)

               cAGCTTCTGTGTTGGGGCCCCCCCAACTTGCATTGTCTGTAGCAAGTTGGAACCCAATTTACGTAGGTAGGGACCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTTTGTTGGGGCCCACAACC‑CAACTCCCa                                                                                                                                      >  2:611100/1‑149 (MQ=17)

                  cTTCTGTGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCATCTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTg                                                                                                                                   <  1:198343/149‑1 (MQ=255)

                  cTTCTGTGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGCAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTg                                                                                                                                   <  1:1096772/149‑1 (MQ=255)

                     ttgttTTGGGGCCCCGCTGTCTTGCATTGTCTGTAGAAACCTGTAATCCACTTACTCTATGTTGGTGCCCACCCCCCATCTCGCATTGCCTGTAGAATTTCTATTCCAATTTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCt                                                                                                                                <  2:153779/148‑1 (MQ=18)

                     cTGTTTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCt                                                                                                                                <  1:270073/149‑1 (MQ=255)

                     cTGTGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCt                                                                                                                                <  1:201704/149‑1 (MQ=255)

                      tgtgTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTg                                                                                                                               <  1:566046/149‑1 (MQ=255)

                      tgtgTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTg                                                                                                                               <  1:1184378/149‑1 (MQ=255)

                      tgtgTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACACCAACTCGCCTTGCCTGTAGAATTTCTTTTCGCAGTTCTCTGTGTTGGGGCCCACCCCC‑CACTTCGCGTTGcgcg                                                                                                                               >  2:1041582/1‑146 (MQ=17)

                         gtTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGtcg                                                                                                                            >  2:860256/1‑147 (MQ=255)

                         gtTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAg                                                                                                                            >  1:210059/1‑149 (MQ=255)

                         gtTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAg                                                                                                                            >  1:223546/1‑149 (MQ=255)

                         gtTGGGGCCCCGCCAACTTGCATTCACTGTGGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCCACCC‑CAACTGGCATTGCCTGTAg                                                                                                                            >  2:291731/1‑149 (MQ=18)

                           tGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTATaa                                                                                                                          >  1:240742/1‑149 (MQ=255)

                           tGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGaa                                                                                                                          >  2:767246/1‑149 (MQ=255)

                              ggCTCCGCGAACTTGCATTGTCTTTAGAAATTTGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCGTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAAttt                                                                                                                       <  2:44679/149‑1 (MQ=18)

                                ccccGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCt                                                                                                                     >  2:1058783/1‑149 (MQ=255)

                                ccccGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCt                                                                                                                     >  2:831507/1‑149 (MQ=255)

                                 cccGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCtt                                                                                                                    <  1:605322/149‑1 (MQ=255)

                                  ccGCCAAGTTGTATTGTCTGTAGCAATTTGGAATGCAGTTTGTTTGTGTTGGGGCTCATAGCCTATCTCGCTTTGCTTGTAGAAGTTCTTGTCGAATTTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCttt                                                                                                                   <  2:610519/149‑1 (MQ=17)

                                   cGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTGTCCGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCtttt                                                                                                                  <  2:669995/149‑1 (MQ=255)

                                         cTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTTTAGATTTTCTTTTCAAAAt                                                                                                            >  2:550151/1‑149 (MQ=255)

                                          ttGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCCACCC‑CAAGTCGCAATAACTGTAGTATTTCtgctttttatt                                                                                                           >  2:535511/1‑139 (MQ=17)

                                           tGCTTTGTCTGTAGAAATTGGGCATCCACTTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATtc                                                                                                          <  1:1170270/149‑1 (MQ=255)

                                           tGCACTGCCTGTAGACATTGGGAACCCAATTTCGCTATGTCGGCGCCCACACCCCACCTCGCACTGCCTGTAGAATTTCTTCTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATtc                                                                                                          <  1:28002/149‑1 (MQ=21)

                                            ccgttctctcTAGAAATTGGAATTACAATATCTCTATGTTGGGGCCCACCCCCCACCTCGCGTCGCCTGTAGAATTTCTTTTCTAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATtct                                                                                                         <  2:354716/143‑1 (MQ=21)

                                                   cTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGtt                                                                                                  >  1:265162/1‑149 (MQ=255)

                                                   cTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGtt                                                                                                  >  1:216442/1‑149 (MQ=255)

                                                         aaaGTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCGCACCC‑CAACTCGCATTGCCGGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGcc                                                                                            <  1:191352/149‑1 (MQ=255)

                                                             tGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTGTCGACATTCTCTGTGTTGGGGCCCCTg                                                                                        <  1:737447/149‑1 (MQ=255)

                                                               ggAATCCAATTTCTCTATGTTGGGGCCCACCCCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGGAATTCGCTGTGTTGGGGCCCCCACCC‑CAACTCGCATTGACTGTAGAATTTGCTTTCGAAATTCCCTGTCTTGGGGCCCCttga                                                                                      >  2:11368/1‑146 (MQ=21)

                                                                 aaTCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCACACACCC‑CCACTCGCATTGCCTGTAGAATTTCTTTTCGAATTTCCCTGTGGCTGGGCCCCTgtcga                                                                                    >  2:431505/1‑145 (MQ=21)

                                                                   tCCAATTTCTCTATGTTGGGGCCCGCGCCCCAACTCGCATTGCCGGTAGAATTTCCTTTCCAACTTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTaga                                                                                  <  1:395804/149‑1 (MQ=21)

                                                                   gtcctcttCTCTCTGTTGCGGCCCTCACCCCCACTCGCACTGCCTACAGCATTTCTTTTCGAAATCCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGATATTCTCTGTGTTGGGGCCCCTGACTaga                                                                                  <  1:942685/143‑1 (MQ=17)

                                                                     cAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGt                                                                                <  1:998494/149‑1 (MQ=255)

                                                                        tttCTCTATGTTGGGGCCCCCCCCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGa                                                                             <  2:1071610/149‑1 (MQ=255)

                                                                             ctATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGaaaaaa                                                                        <  1:1213187/149‑1 (MQ=255)

                                                                             ctATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGaaaaaa                                                                        >  1:1145338/1‑149 (MQ=255)

                                                                              tATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAg                                                                       <  2:175621/149‑1 (MQ=255)

                                                                               ttgtgGGGGCCCACCCCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGc                                                                      <  1:378026/148‑1 (MQ=255)

                                                                               aTGTTGGGGCCCACACCCCAACTCCCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGc                                                                      >  1:796874/1‑149 (MQ=255)

                                                                                tGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCt                                                                     >  1:831845/1‑149 (MQ=255)

                                                                                 gTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCtt                                                                    >  1:401337/1‑149 (MQ=255)

                                                                                         ccACACCCCATCTCGCACTCCCTGTTGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAg                                                            <  1:161516/149‑1 (MQ=255)

                                                                                           cctccccAATTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAgcg                                                          <  2:494972/146‑1 (MQ=255)

                                                                                            ctccctagcccgcgTTGCTTTTAGACTTTCTTTGCGAAATTCTCTGTGTTGGGGCCCACCCCC‑CAACTCGCATTGCCTGTAGAATTTCTGTTCGAAATTCTCTGTGTTGGGGCCCCTTACTAGAGTTGAAAAAAGCTTGTTGCAAgcgc                                                         <  2:1205411/139‑1 (MQ=17)

                                                                                                 ccaCTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGACAAAAGCTTGTTGCAAGCGCAtttt                                                    <  1:689635/147‑1 (MQ=255)

                                                                                                 cAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCAtttt                                                    >  1:1013176/1‑149 (MQ=255)

                                                                                                 cAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGAAAAAAAATAAAAAAAGCTTGTTGCAAGCGCAtttt                                                    <  2:500083/149‑1 (MQ=18)

                                                                                                      cGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCATATCTATAGTTG‑CTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTttcattc                                               <  1:1320623/149‑1 (MQ=21)

                                                                                                            tccTTTAGTATTTCTTTGCGAAATTCTCTGTGTTGGAGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCaa                                         <  2:1342380/148‑1 (MQ=255)

                                                                                                            gCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCaa                                         <  2:944002/149‑1 (MQ=255)

                                                                                                            gCCTGTAGAATTCCTTTGCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCACATTTTCATTCAGTCaa                                         <  1:171740/149‑1 (MQ=255)

                                                                                                            cccTGTAGAGTTCCGTTTTGGAATTCTCTGTGTCGGGGCCCACGCCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCTGACTATAGTGGAAAAAAGATTGTTGCAAGCGCAGTGTCATTCAGTCaa                                         <  2:817899/148‑1 (MQ=14)

                                                                                                              cTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAact                                       <  1:335019/149‑1 (MQ=255)

                                                                                                               tGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAacta                                      <  2:838586/149‑1 (MQ=255)

                                                                                                                 tAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAactact                                    <  1:661218/149‑1 (MQ=255)

                                                                                                                  gggctttCTTTGCGAAATTCTCGGTGTTGGGGCCCACACCC‑CAACTCGCATTGCTTGTAGGATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAActacta                                   <  2:706120/145‑1 (MQ=17)

                                                                                                                  aGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAActacta                                   <  1:1282304/149‑1 (MQ=255)

                                                                                                                  aGAATTTCTTTGCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAActacta                                   <  1:241409/149‑1 (MQ=255)

                                                                                                                  aGAATTTCTTTCCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAActacta                                   <  1:1302020/149‑1 (MQ=255)

                                                                                                                   gAATTTCTTTTCGAAATTCTCTGTGTTTGGGCCCACACCC‑CACCTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACCAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAg                                  <  1:1019526/149‑1 (MQ=255)

                                                                                                                   gAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCTCATTTTCATTCAGTCAACTACTAg                                  <  1:800501/149‑1 (MQ=255)

                                                                                                                   gAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAg                                  <  1:602031/149‑1 (MQ=255)

                                                                                                                   gAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAg                                  <  1:1014514/149‑1 (MQ=255)

                                                                                                                   agaTTTGTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAg                                  <  2:1209774/147‑1 (MQ=255)

                                                                                                                    aaTTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGc                                 <  2:6669/149‑1 (MQ=255)

                                                                                                                    aaTTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGc                                 <  2:533500/149‑1 (MQ=255)

                                                                                                                    aaTTGCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAACTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGc                                 <  1:52850/149‑1 (MQ=255)

                                                                                                                     aTTTCTTTTCGACATCCTCTGTGTTGGGGCCCACCCCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAATCGCATTTTCATTCAGTCAACTACTAGCa                                <  2:120657/149‑1 (MQ=255)

                                                                                                                     aTTTCTTTTCGAAATTCTCTGTGTTGGGTCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTGGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCa                                <  1:760591/149‑1 (MQ=255)

                                                                                                                     aTTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCa                                <  2:82939/149‑1 (MQ=255)

                                                                                                                      tttCTTTTCGAACTTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTCGAATTTCTTTTCGCCATTCTCTGTGTTAGGGCCCCTGACTACAGATGAAAAAAGCTTGTTGCAAACACATTTTCATTGAGTCAACTACTAGCaa                               >  2:924322/1‑149 (MQ=17)

                                                                                                                      tttCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCaa                               <  2:1245341/149‑1 (MQ=255)

                                                                                                                      tttCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCaa                               >  2:123917/1‑149 (MQ=255)

                                                                                                                      tttCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTAATTCAGTCAACTATTAGCaa                               >  2:505704/1‑149 (MQ=255)

                                                                                                                      tttCCTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCaa                               <  1:396523/149‑1 (MQ=255)

                                                                                                                       ttCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCaat                              >  1:513147/1‑149 (MQ=255)

                                                                                                                        tcctttCGAAATTCTCCGCGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGGAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCaata                             <  1:465827/146‑1 (MQ=255)

                                                                                                                        tCTTTTCGAACTTCTCACGGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAAAATTAAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCaata                             <  2:869043/149‑1 (MQ=14)

                                                                                                                                      tctGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGAcc               <  1:1138145/149‑1 (MQ=255)

                                                                                                                                       ctGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTCGGGGCCCCCGACTCGATTTGAAAAAAGCTTGTTGCAAGCGCCTTTTCATTAAGTCAACTACTAGAAAGATAATAATATAAAccc              >  2:326715/1‑149 (MQ=14)

                                                                                                                                           gtTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGAGCCTAgg          >  1:532994/1‑149 (MQ=255)

                                                                                                                                            ttGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGa         <  1:1135328/149‑1 (MQ=255)

                                                                                                                                             tGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGAGCCTTTTCATTCGGTCAACTACTAGCAATATAATATTATAGACCCTAGGAc        >  1:1254788/1‑149 (MQ=255)

                                                                                                                                               gggCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTGGGACAt      >  1:163429/1‑149 (MQ=255)

                                                                                                                                               gggCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCGCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGGCAt      >  1:948620/1‑149 (MQ=255)

                                                                                                                                                ggCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACAtt     <  2:543696/149‑1 (MQ=255)

                                                                                                                                                   ccACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGAt  >  2:25974/1‑149 (MQ=255)

AAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCC‑CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGAT  >  CP000730/848432‑848727

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.