| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 848580 | 138 (1.090) | 8 (0.070) +CTGAAAAAAAAAA |
7/270 | 5.5 | 5.4% | coding (101/312 nt) | USA300HOU_0793 | hypothetical protein |
| ? | CP000730 | 2866847 = | 167 (1.320) | intergenic (‑246/+207) | USA300HOU_2711/noc | hypothetical membrane protein/possible transcriptional regulator | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/848435‑848580‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATC > CP000730/2866847‑2866940 ||||||||||||| CTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGCATATCTTTTCGACATTCTCGGTGTTGGGGCCCCcc > 2:565905/1‑147 ACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCA‑TCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGAAAAAAAAAAAAAAAAGCTTGTTACAAGCGCATTTTCG < 2:685135/149‑1 GAAATTGGTAATCCAATTTCTCCTTGTTGGGGCCC‑CGCCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGTCCCTGAAAAAAAAAAAAAAAAGCTTATTACAAGCGCATTTTCGTTCAGTCAATTACTGC < 2:934050/149‑1 aatgtGAATCCAATTTCTCTTTGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCTGAAAAAAAAAAAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCA < 2:466277/144‑1 gcATCCAATTTCTCTTTGTTGGGGCCC‑CGCCCCACCTCGCTTTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGCGGCCCCTGAAAAAAAAAAAAAAAAGCTTATTACAAGCGCATTTTCGTTCAGTCAATTACTGCCAATATAA < 2:355530/147‑1 tccctcagcCTCTGTGTTGGGGCCCTCACCCCACCTCGCTTTGCCTGCAGAAAATCTTTTCGAAATTCTCTGTGTTTCGGCCCCTGACAAAAAAAAAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAAC < 2:46429/140‑1 cgtccCACCCCAACTTGCATTGCCTGTAGATTTTCTTTTCGAAATTCTCTGTGTCGGGGCCCCTGAAAAAAAACAAAAAAAGCTTGTTACTAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGAAGAACATAGAACATTG < 2:989351/144‑1 ACACCCCAACTCGCATTGCCTGTAGAATTTATTGTCGAAATTCTCTGTGTTGGGGCCCCAAAAAAAAAAAAAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACATCGTAGAGCATAGAACATTGATTT < 2:1194689/149‑1 TGCCTGTAGAAATTCTTTTCGAAATTCTCTATGTTGTGCCCCCTGAAAAAAAAAAAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTctcaagctcatc < 2:858947/149‑13 ||||||||||||| CTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTATGTTGGGGCCCACACCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/848435‑848580‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATC > CP000730/2866847‑2866940 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |