New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	514402 =	38 (1.000)	24 (0.780) +TATTTTTTGGTTAAAGTGATATTGCT	4/218	4.2	39.5%	intergenic (+70/‑304)	rrs1/rrl1	16S ribosomal RNA/23S ribosomal RNA
	?	CP000730	514469 =	53 (1.390)					intergenic (+137/‑237)	rrs1/rrl1	16S ribosomal RNA/23S ribosomal RNA
Rejected: Coverage evenness skew score above cutoff.

TAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAG  >  CP000730/514293‑514542                                                                                                              |                                                                                                                                             tAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATAttttt                                                                                                               <  1:53385/141‑1 (MQ=32)       ggTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTa                                                                                                         >  1:57645/1‑141 (MQ=32)          aGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTAAAATATTTTTTGGTTAAAg                                                                                                      >  1:134848/1‑141 (MQ=17)          aGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCTAAGGATATATTCGGAACAGCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAg                                                                                                      >  2:438751/1‑141 (MQ=17)             cGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGa                                                                                                   >  1:24701/1‑141 (MQ=32)                      aGGTGCGGCTGGATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTa                                                                                          <  2:344154/141‑1 (MQ=32)                      aGGTGCGGCTGGATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTa                                                                                          >  1:356704/1‑141 (MQ=32)                            ggCTGGATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGaaaa                                                                                    <  1:36461/141‑1 (MQ=35)                               tGGATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATaa                                                                                 <  2:396645/141‑1 (MQ=38)                                ggATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATaaa                                                                                <  1:259543/141‑1 (MQ=39)                                 gATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATTACGTGACATATGGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAg                                                                               >  1:154224/1‑141 (MQ=255)                                     aCCTCCTTTCTTAGGATATATTCGGAACGTCTTCTTCAGAAGATGCGGAATAACGTGTCATATTGTATTCAGTTTTGAATTTTTATTTAATATTTTAATTTTTTTCATTTAAATTGATATTTTTTATGACAATattacact                                                                           >  2:214257/1‑134 (MQ=11)                                      cctcctTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTa                                                                          <  1:435575/141‑1 (MQ=255)                                                aaGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAATATGCGAGCGCt                                                                >  2:359482/1‑141 (MQ=255)                                                 aGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCtt                                                               <  2:191718/141‑1 (MQ=255)                                                              aaCATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGaaa                                                  <  2:10503/141‑1 (MQ=255)                                                               aCATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAAt                                                 <  2:363264/141‑1 (MQ=255)                                                                 aTCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTg                                               >  2:148567/1‑141 (MQ=255)                                                                  tcttctTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGt                                              >  1:403229/1‑141 (MQ=255)                                                                      cttcAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTGAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGGGATCGCTTGACTAAAAAGAAATTGTACAt                                          >  2:413178/1‑141 (MQ=255)                                                                      cttcAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACAt                                          >  1:408901/1‑141 (MQ=255)                                                                      cttcAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACAt                                          <  2:339488/141‑1 (MQ=255)                                                                      cttcAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACAt                                          >  1:238119/1‑141 (MQ=255)                                                                       ttcAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACAtt                                         >  1:206430/1‑141 (MQ=255)                                                                            aagaTGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGaaaa                                    >  2:366215/1‑141 (MQ=255)                                                                                 gCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGa                               >  2:334324/1‑141 (MQ=255)                                                                                       tAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGAtaagta                         <  1:366215/141‑1 (MQ=255)                                                                                            tGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAgtaagtaa                    >  2:230307/1‑141 (MQ=255)                                                                                             gatatatTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTaaa                   <  2:406508/138‑1 (MQ=255)                                                                                             gACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTaaa                   >  1:124272/1‑141 (MQ=255)                                                                                              aCATATTGTATTCATTTTTGAATGTTTATTTAACATTCAAATAGTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTaaaa                  <  2:416061/141‑1 (MQ=255)                                                                                                   ttGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTTTTTTTTTTTATATTGCTAATGAAAATAAAGCAGTATGCTAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAg             >  2:374323/1‑141 (MQ=21)                                                                                                    tGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAata                <  1:90774/137‑1 (MQ=255)                                                                                                    tGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAata                >  2:90774/1‑137 (MQ=255)                                                                                                       atgcAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGAttt         >  2:377016/4‑141 (MQ=255)                                                                                                        ttCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGAtttt        >  1:37885/1‑141 (MQ=255)                                                                                                            gTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCa    >  2:234042/1‑141 (MQ=255)                                                                                                             ttttGAATGTTAATTTAACATTCAAATATTTTTTGTTTCTAGTAAGATTCCTTATGATAATAAAACAGTATGCCAGCGCATGACTAAAAAGAAATTTTACATTGAACTTTATCTCAGTATGTTAAAAATAAATATTACCaa   >  2:191593/1‑141 (MQ=16)                                                                                                              tttGAATGTTTATTTAACATTCAAATATTTTTTTTTTTTTTTTATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAAtatattgcttgtttta  >  2:74799/1‑129 (MQ=21)                                                                                                              tttGAATGTTTATTTAACATTCAAACATTTTTTGGTGAAAGTGATATTGCTTATAAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTATACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAg  <  2:401739/141‑1 (MQ=255)                                                                                                              |                                                                                                                                             TAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAG  >  CP000730/514293‑514542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.