New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	514402 =	38 (1.000)	24 (0.780) +TATTTTTTGGTTAAAGTGATATTGCT	4/218	4.2	39.5%	intergenic (+70/‑304)	rrs1/rrl1	16S ribosomal RNA/23S ribosomal RNA
	?	CP000730	514469 =	53 (1.390)					intergenic (+137/‑237)	rrs1/rrl1	16S ribosomal RNA/23S ribosomal RNA
Rejected: Coverage evenness skew score above cutoff.

CCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTG  >  CP000730/514330‑514603                                                                                                                                            |                                                                                                                                       cctcctTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTa                                                                                                                                       <  1:435575/141‑1 (MQ=255)           aaGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAATATGCGAGCGCt                                                                                                                             >  2:359482/1‑141 (MQ=255)            aGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCtt                                                                                                                            <  2:191718/141‑1 (MQ=255)                         aaCATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGaaa                                                                                                               <  2:10503/141‑1 (MQ=255)                          aCATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAAt                                                                                                              <  2:363264/141‑1 (MQ=255)                            aTCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTg                                                                                                            >  2:148567/1‑141 (MQ=255)                             tcttctTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGt                                                                                                           >  1:403229/1‑141 (MQ=255)                                 cttcAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTGAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGGGATCGCTTGACTAAAAAGAAATTGTACAt                                                                                                       >  2:413178/1‑141 (MQ=255)                                 cttcAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACAt                                                                                                       <  2:339488/141‑1 (MQ=255)                                 cttcAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACAt                                                                                                       >  1:238119/1‑141 (MQ=255)                                 cttcAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACAt                                                                                                       >  1:408901/1‑141 (MQ=255)                                  ttcAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACAtt                                                                                                      >  1:206430/1‑141 (MQ=255)                                       aagaTGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGaaaa                                                                                                 >  2:366215/1‑141 (MQ=255)                                            gCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGa                                                                                            >  2:334324/1‑141 (MQ=255)                                                  tAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGAtaagta                                                                                      <  1:366215/141‑1 (MQ=255)                                                       tGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAgtaagtaa                                                                                 >  2:230307/1‑141 (MQ=255)                                                        gatatatTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTaaa                                                                                <  2:406508/138‑1 (MQ=255)                                                        gACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTaaa                                                                                >  1:124272/1‑141 (MQ=255)                                                         aCATATTGTATTCATTTTTGAATGTTTATTTAACATTCAAATAGTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTaaaa                                                                               <  2:416061/141‑1 (MQ=255)                                                              ttGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTTTTTTTTTTTATATTGCTAATGAAAATAAAGCAGTATGCTAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAg                                                                          >  2:374323/1‑141 (MQ=21)                                                               tGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAata                                                                             >  2:90774/1‑137 (MQ=255)                                                               tGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAata                                                                             <  1:90774/137‑1 (MQ=255)                                                                  atgcAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGAttt                                                                      >  2:377016/4‑141 (MQ=255)                                                                   ttCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGAtttt                                                                     >  1:37885/1‑141 (MQ=255)                                                                       gTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCa                                                                 >  2:234042/1‑141 (MQ=255)                                                                        ttttGAATGTTAATTTAACATTCAAATATTTTTTGTTTCTAGTAAGATTCCTTATGATAATAAAACAGTATGCCAGCGCATGACTAAAAAGAAATTTTACATTGAACTTTATCTCAGTATGTTAAAAATAAATATTACCaa                                                                >  2:191593/1‑141 (MQ=16)                                                                         tttGAATGTTTATTTAACATTCAAATATTTTTTTTTTTTTTTTATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAAtatattgcttgtttta                                                               >  2:74799/1‑129 (MQ=21)                                                                         tttGAATGTTTATTTAACATTCAAACATTTTTTGGTGAAAGTGATATTGCTTATAAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTATACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAg                                                               <  2:401739/141‑1 (MQ=255)                                                                            gAATGTTTATTTAACATTCAAATATTTTTTGGTTATAGTCATATTGCTTATGAAAATAAAGCAGTATGCGAGCGATTGACTAAAAAGAAATTGTACATTGAAAATTAGATAAGTAAGTAAAATATAAATTTTACCAAGCaa                                                            >  2:105452/1‑141 (MQ=25)                                                                            gAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATCAAGCAGTATGCCAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCaa                                                            >  2:105462/1‑141 (MQ=255)                                                                              aTGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCaaaa                                                          <  2:294032/141‑1 (MQ=255)                                                                                 tttatttaACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCg                                                       >  1:442157/1‑141 (MQ=255)                                                                                       taACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGaa                                                 <  2:164085/141‑1 (MQ=255)                                                                                        aaCATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAAt                                                <  1:27085/141‑1 (MQ=255)                                                                                             tCAAATATTTTTTGTTTATATTTATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGATTGAATAAaga                                           >  2:37675/1‑141 (MQ=18)                                                                                                 atatTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGttt                                       >  1:400353/1‑141 (MQ=255)                                                                                                   atTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATa                                               >  2:34683/1‑131 (MQ=255)                                                                                                   atTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATa                                               <  1:34683/131‑1 (MQ=255)                                                                                                   atTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTa                                     <  1:265848/141‑1 (MQ=255)                                                                                                   atTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTa                                     <  1:37104/141‑1 (MQ=255)                                                                                                          ggTTAAAGTGATATTGCCTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGc                              <  1:347742/141‑1 (MQ=255)                                                                                                             tAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTg                           >  1:186161/1‑141 (MQ=255)                                                                                                                    atatTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCAt                    >  1:269767/1‑141 (MQ=255)                                                                                                                        tGCTTATGCAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAATCCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGa                <  2:357711/141‑1 (MQ=255)                                                                                                                        tGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGa                <  1:173429/141‑1 (MQ=255)                                                                                                                         gCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCa                                                             >  1:213716/1‑95 (MQ=255)                                                                                                                         gCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCa                                                             <  2:213716/95‑1 (MQ=255)                                                                                                                           ttATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTCTAAATAAGCTTGAATTCATAAGAaat             >  2:115020/1‑141 (MQ=255)                                                                                                                            tATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAaata            <  2:205912/141‑1 (MQ=255)                                                                                                                               gAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATc         <  2:105837/141‑1 (MQ=40)                                                                                                                                    tAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAg    >  2:198530/1‑141 (MQ=35)                                                                                                                                     aaaGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAgt   <  1:1610/141‑1 (MQ=35)                                                                                                                                      aaGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAgtg  >  2:34445/1‑141 (MQ=34)                                                                                                                                            |                                                                                                                                       CCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAATATTTTTTGGTTAAAGTGATATTGCTTATGAAAATAAAGCAGTATGCGAGCGCTTGACTAAAAAGAAATTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTG  >  CP000730/514330‑514603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.