New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	920680 =	30 (0.790)	3 (0.090)	3/248	5.2	10.4%	coding (97/849 nt)	yunF	hypothetical protein
	?	CP000730	920729 =	24 (0.690)					coding (146/849 nt)	yunF	hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TATGATAAAAGTTATATGGTATGATGACATTGGTGATATATATGATAAACATCGGATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCAAAATTCATCAAGCACTCACATTGCATGCAGACTACAA  >  CP000730/920543‑920819                                                                                                                                          |                                                                                                                                            tATGATAAAAGTTATATGGTATGATGACATTGGTGATATATATGATAAACATCGGATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTc                                                                                                                                          >  2:195314/1‑141 (MQ=255)     aTAAAAGTTATATGGTATGATGACATTGGTGATATATATGATAAACATCGGATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGt                                                                                                                                      <  2:212947/141‑1 (MQ=255)                               tGGTGATATATATGATAAACATCGGATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATg                                                                                                            >  2:305378/1‑141 (MQ=255)                                 gTGATATATATGATAAACATCGGATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCg                                                                                                          >  1:404751/1‑141 (MQ=255)                                   gATATATATGATAAACATCGGATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGAt                                                                                                        >  1:427818/1‑141 (MQ=255)                                     tatatatGATAAACATCGGATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATAc                                                                                                      <  2:317592/141‑1 (MQ=255)                                          atGATAAACATCGGATTAACAGGTTGGGGTGATCACTATTCATTATATGATGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCg                                                                                                 >  2:392434/1‑141 (MQ=255)                                            gATAAACATCGGATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGga                                                                                               <  1:42842/141‑1 (MQ=255)                                                aaCACCGGATCAACAGGTGGGGGTGATAACTATTCATTATATCAAGATTTAGAACGCCATACCGATAAACTTAAAACATATGCTGGACCTTTTCCGGTAGTCGAATTAGATGCGACATACTATGCGATACAACCGgaaaga                                                                                           >  2:438034/1‑141 (MQ=255)                                                     cGGATTAACAGTGGCGGGTGATCACCATCCATTATATGAAGATTTAGAACGCCACACCGATAAACATAAAACATATGCTGGACATTCTCCGCCTCTCGAATTAGATGCGCCATACTATGCGATACAACCGgaaagacctat                                                                                      >  2:118108/1‑136 (MQ=255)                                                     cGGATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAatat                                                                                      >  2:418853/1‑141 (MQ=255)                                                       gATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAatatat                                                                                    >  1:419997/1‑141 (MQ=255)                                                                     ggTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATaaaa                                                                      >  2:316194/1‑141 (MQ=255)                                                                       tGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGa                                                                    <  1:305378/141‑1 (MQ=255)                                                                            aCTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGc                                                               <  2:276212/141‑1 (MQ=255)                                                                                     tataTGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACAt                                                      <  1:46372/141‑1 (MQ=255)                                                                                      atatGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATGCAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACAtt                                                     <  2:213428/141‑1 (MQ=255)                                                                                      atatGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACAtt                                                     <  2:428615/141‑1 (MQ=255)                                                                                              aTTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTtg                                             >  2:259700/1‑141 (MQ=255)                                                                                                 tAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCTACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTgg                                          <  2:427818/141‑1 (MQ=255)                                                                                                   gAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTc                                        >  1:209509/1‑141 (MQ=255)                                                                                                       gCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCaaaa                                    <  1:148068/141‑1 (MQ=255)                                                                                                       gCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCaaaa                                    <  1:50051/141‑1 (MQ=255)                                                                                                             ccGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCAAAATtcatc                              >  1:397793/1‑141 (MQ=255)                                                                                                                  aaaCTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGgaaag                                                                                            >  1:213412/1‑74 (MQ=255)                                                                                                                  aaaCTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGgaaag                                                                                            <  2:213412/74‑1 (MQ=255)                                                                                                                          aaCATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCAAAATTCATCAAGCACTCACAtt                 <  2:326415/141‑1 (MQ=255)                                                                                                                               atGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCAAAATTCATCAAGCACTCACATtgcatg            >  1:109701/1‑141 (MQ=255)                                                                                                                                    ggACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCAAAATTCATCAAGCACTCACATTGCATGCAGAc       >  1:205691/1‑141 (MQ=255)                                                                                                                                         ttttCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCAAAATTCATCAAGCACTCACATTGCATGCAGACTACaa  <  1:195314/141‑1 (MQ=255)                                                                                                                                          |                                                                                                                                            TATGATAAAAGTTATATGGTATGATGACATTGGTGATATATATGATAAACATCGGATTAACAGGTTGGGGTGATCACTATTCATTATATGAAGATTTAGAACGCCAAACCGATAAACTTAAAACATATGCTGGACATTTTCCGGTTGTCGAATTAGATGCGACATACTATGCGATACAACCGGAAAGAAATATATTGAAATGGATAAAAGAAACGCCTGATACATTTGAATTTGTGGTCAAAATTCATCAAGCACTCACATTGCATGCAGACTACAA  >  CP000730/920543‑920819

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.