New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	52495 =	75 (0.790)	134 (1.420) +T	4/284	10.9	61.9%	intergenic (+105/‑568)	USA300HOU_0043/USA300HOU_0044	hypothetical membrane protein/possible transcriptional regulator
	?	CP000730	= 52988	91 (0.960)					intergenic (+598/‑75)	USA300HOU_0043/USA300HOU_0044	hypothetical membrane protein/possible transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.

ATGTATCGTTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCAT  >  CP000730/52347‑52637                                                                                                                                                     |                                                                                                                                               aTGTATCGTTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGAATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATcgc                                                                                                                                                >  2:442689/1‑149 (MQ=255)        gttgttTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAaat                                                                                                                                         <  2:672843/149‑1 (MQ=255)         ttgttTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAaata                                                                                                                                        >  2:876835/1‑149 (MQ=255)          tttgttttAAAGCAATAGATGCCTTAAAGAAATAGTTTGTCACTGAAAATATTTATATATATAATTAAAATTAATTAAGATTAAGTCAGGATAATGGAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATcgcg                                                                                                                                               <  1:332714/137‑1 (MQ=255)          tgttTTTTAAATTATTAGATGCATTAAAGAAATATTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATcgcg                                                                                                                                               <  1:358765/141‑1 (MQ=255)          tgttTTTTAAAGCAATAGATGCCTTAAACAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAaataa                                                                                                                                       <  2:650926/149‑1 (MQ=255)           gttTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTCAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATATTGTGGAACTCGCGt                                                                                                                                              >  1:105940/1‑141 (MQ=255)           gttTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATcgcgg                                                                                                                                              >  1:175700/1‑140 (MQ=255)             tttttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAAtcatca                                                                                                                                    >  2:345272/1‑149 (MQ=255)             tttttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCa                                                                                                                                    >  2:307902/1‑149 (MQ=255)             tttttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCa                                                                                                                                    >  2:369975/1‑149 (MQ=255)              ttttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCag                                                                                                                                   <  2:848992/149‑1 (MQ=255)              ttttAAAGCATTAGATGACTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAAGTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCag                                                                                                                                   <  2:137963/149‑1 (MQ=255)                 tAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAaata                                                                                                                                        >  1:968297/1‑141 (MQ=255)                    aGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAAt                                                                                                                             >  2:111397/1‑149 (MQ=255)                    aGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAAt                                                                                                                             >  2:854970/1‑149 (MQ=255)                      cATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAGAAATGTTGTGGAAATCGCGTGAAATAATAAGAGGAATCg                                                                                                                           >  2:666306/1‑149 (MQ=255)                        ttAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGtt                                                                                                                         <  2:284631/149‑1 (MQ=255)                         tAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAgg                                                                                                                                <  1:313735/141‑1 (MQ=255)                            aTGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAAt                                                                                                                             >  1:547227/1‑141 (MQ=255)                            aTGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGaa                                                                                                                     >  2:231410/1‑149 (MQ=255)                                 ttAAGGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAatcat                                                                                                                <  2:321965/149‑1 (MQ=255)                                 ttAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAatcat                                                                                                                >  2:584250/1‑149 (MQ=255)                                 ttAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAatcat                                                                                                                >  2:811750/1‑149 (MQ=255)                                    aaaaaaTAGTTTTTTACTGAAAATATTTAAAGAAATTATTAGGATGATTTAATATTAAGTCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGaa                                                                                                                     <  1:541744/138‑1 (MQ=38)                                    aaGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGaa                                                                                                                     <  1:564751/141‑1 (MQ=255)                                    aaGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGaa                                                                                                                     <  1:896032/141‑1 (MQ=255)                                    aaGAAATAGTTTTGTACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGaa                                                                                                                     <  1:857793/141‑1 (MQ=255)                                      gAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtag                                                                                                           >  2:883255/1‑149 (MQ=255)                                           aGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATc                                                                                                      >  2:408052/1‑149 (MQ=255)                                           aGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATc                                                                                                      >  2:273329/1‑149 (MQ=255)                                             tttttCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgc                                                                                                    >  2:113214/1‑149 (MQ=255)                                             tttttCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAAAGTTGTGGAAATCGCGGGAAATGATCAGAGGAATCGTTTGAAATCATCGTAGTAATtgc                                                                                                    >  2:889756/1‑149 (MQ=255)                                               tttCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgc                                                                                                  <  2:315998/149‑1 (MQ=255)                                                         aaTATTTATAGATAGAATTAAAATTAATTAATATTAAGCCAGGATACTGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAAACGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACg                                                                                        <  2:221942/149‑1 (MQ=255)                                                              ttATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAAGGTTGTGGAAATTAGACGAGATAGTCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaaa                                                                                   >  2:921207/1‑149 (MQ=37)                                                                  aGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGt                                                                                       <  1:141217/141‑1 (MQ=255)                                                                  aGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGCCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCCTTAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaataat                                                                               <  2:779497/149‑1 (MQ=255)                                                                     tataATTAAAATTAACTAATACTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCag                                                                            <  2:251385/149‑1 (MQ=255)                                                                                  aattaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTAAAATAATCAGAGGAATCGTTTGa                                                               <  2:695860/149‑1 (MQ=255)                                                                                    ttaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATc                                                                     <  1:682195/141‑1 (MQ=255)                                                                                      aatATTAAGGCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGGTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGt                                                                   <  1:375997/141‑1 (MQ=255)                                                                                      aatATAAAGCCAGGATAATGTAGACTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGCGCAACAATCCGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGt                                                                   <  1:618/141‑1 (MQ=25)                                                                                       atatTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAatca                                                          >  2:147533/1‑149 (MQ=255)                                                                                         atTAAGCCAGGATAATGTAGTCTTAATCGTTATGAAATACGAAAAATGTTGTGGAAATAGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGAAATCGCGCGAAAATCACGTGACATAATCAGAGGAATCGTTTg                                                                <  1:286291/141‑1 (MQ=255)                                                                                          ttAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCg                                                       >  2:713494/1‑149 (MQ=255)                                                                                          ttAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCg                                                       >  2:598799/1‑149 (MQ=255)                                                                                          ttAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAAGCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCg                                                       >  2:319248/1‑149 (MQ=255)                                                                                           tAAGCCAAGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaa                                                              <  1:1186997/141‑1 (MQ=255)                                                                                            aaGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgta                                                     >  2:644086/1‑149 (MQ=255)                                                                                              gCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAGATAATCAGAGGAATCGGTGGAAATCATCgtagg                                                   >  2:305774/1‑148 (MQ=255)                                                                                              gCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtagt                                                   >  2:802177/1‑149 (MQ=255)                                                                                               ccAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtagta                                                  >  2:284617/1‑149 (MQ=255)                                                                                               acAGGGTAATGTAGTCTTAAGCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAatca                                                          <  1:143222/140‑1 (MQ=255)                                                                                                         gTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGTATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAAt                                                >  1:682358/1‑141 (MQ=255)                                                                                                            gTCTTAATCGTTCTGAAATACGAAAAATGTTGTGCATATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaaaa                                     >  2:451532/1‑148 (MQ=255)                                                                                                            gTCTTAATCGTTCTGAAATACGAAAAATGTACAGACAATCTCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAAt                                     >  2:451533/1‑149 (MQ=14)                                                                                                             tCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAACTc                                    >  2:366274/1‑149 (MQ=255)                                                                                                                tAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACg                                 <  2:700595/149‑1 (MQ=255)                                                                                                                 aaTCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGt                                <  2:868271/149‑1 (MQ=255)                                                                                                                    cGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaa                             >  2:87992/1‑149 (MQ=255)                                                                                                                    cGTTCAGAAATACGAAAAATGTTGTAGAAATCGCGTAAAATAATCAGAGGAATAGTTTGAAATCATCGTAATAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAAt                                     <  1:922574/141‑1 (MQ=17)                                                                                                                     gtttagAAATACGAAAAATGTATTTAAAATCGGGTGAAATAATCAGAGGAAGCGTGTGAAATAATCGGAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATc                                    <  1:733330/136‑1 (MQ=14)                                                                                                                       tCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaata                          >  2:128020/1‑149 (MQ=255)                                                                                                                             aTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGGGAGAATCACGTGAAATAATCGGAGGAGTCGTTTGGAGTAGTCGTAGTAAGGGCGGGAAAATCATGGGaaa                            >  1:418963/1‑141 (MQ=17)                                                                                                                                    aaaTGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGTGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCg             <  2:606142/149‑1 (MQ=255)                                                                                                                                      atgtgttagAAATCGCGTGAAATAATCAAAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGtt           <  2:767744/141‑1 (MQ=255)                                                                                                                                      aTGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGtt           <  2:593450/149‑1 (MQ=40)                                                                                                                                       agctgtgGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGttt          <  2:250268/146‑1 (MQ=25)                                                                                                                                         ttgtGGAAATCGCGTTAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGa        <  2:859535/149‑1 (MQ=37)                                                                                                                                         ttgtGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGCGGaa                >  1:626757/1‑141 (MQ=38)                                                                                                                                         ttgtGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGa        <  2:859563/149‑1 (MQ=37)                                                                                                                                         gatggaaaaTCGCGTGAAATAATCAAAGGAAATGTTTGAAATCATCGGAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGaa                <  1:138313/135‑1 (MQ=11)                                                                                                                                            tgGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAat     >  2:707360/1‑149 (MQ=35)                                                                                                                                              gAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGTGGAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAatca   <  2:637758/149‑1 (MQ=17)                                                                                                                                              gAAATCGCGCGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAGGCTCGTGAAATAATCAGAGGAATCGTTTGAAatca   <  2:688439/149‑1 (MQ=255)                                                                                                                                               aaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAGTCAGAGGAAACGTTTGAAatcgt  >  2:324256/1‑147 (MQ=12)                                                                                                                                               aaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAatcat  <  2:538488/149‑1 (MQ=32)                                                                                                                                                     |                                                                                                                                               ATGTATCGTTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCAT  >  CP000730/52347‑52637

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.