New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	854380 =	84 (0.850)	7 (0.070)	6/246	NT	8.1%	intergenic (‑242/‑460)	USA300HOU_0798/USA300HOU_0799	nucleoside‑diphosphate sugar epimerase/hypothetical protein
	?	CP000730	854405 =	79 (0.840)					intergenic (‑267/‑435)	USA300HOU_0798/USA300HOU_0799	nucleoside‑diphosphate sugar epimerase/hypothetical protein

TTAAGTGTTGTGTTAAAAGTTTTTATGTTTAGATTGTTATATTACTATGTATTCTTAAATTTGTTTAAAAAATTAATGCTTTAAATTGATGTATAATGGGAATAAGAAATAAATAAAAACGACCCGCACGATTAACGTACGGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/854524‑854380 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggtcGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTAATATAACAATCTAAACATAAAAACTTTTAACACAACACTTAAACCAATGCTTTAATTTTC  >  CP000730/854405‑854542                                                                                                                                                                                                                                                                                             TTAAGTGTTGTGTTAAAAGTTTTTATGTTTAGATTGTTATATTACTATGTATTCTTAAATTTGTTTAAAAAATTAATGCTTTAAATTGATGTATAATGGGAATAAGAAATAAATAAAAACGACCCGCACGATTAACGTACG                                                                                                                                                <  1:347776/141‑1   AAGTGTTGTGTTAAAAGTTTTTATGTTTAGATTGTTATATTACTATGTATTCTTAAATTTGTTTAAAAAATTAATGCTTTAAATTGATGTATAATGGGAATAAGAAATAAATAAAAACGACCCGCACGATTAACGTACGGG                                                                                                                                              >  1:208423/1‑141    AGTGTTGTGTTAAAAGTTTTTATGTTTAGATTGTTATATTACTATGTATTCTTAAATTTGTTTAAAAAATTAATGCTTTAAATTGATGTATAATGGGAATAAGAAATAAATAAAAACGACCCGCACGATTAACGTACGGGT                                                                                                                                             >  2:369796/1‑141                                                                   AAAAAATTAATGCTTTAAATTGATGTATAATGGGAATAAGAAATAAAGAAAAACGACGGGTACGTTAATCGTGCGGGTCGTTTTTATTTATTTATTATTACCAATATACATCAATTTAAAGCATTAATTTTTTAAACAAAa                                                                              >  2:713342/1‑140                                                                                                                             CGCACGATTAACGTACGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTAATATAACAATCTAAACATCAAAACTTTTAACACAACACTTAA                    >  1:610396/1‑141                                                                                                                             CGCACGATTAACGTACGGGTCGTTTTTATTTATTTCTTACTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTAATATAACAATCTAAACATAAAAACTTTTAACACAACACTTAA                    >  2:1167561/1‑141                                                                                                                               CACGATTAACGTACGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAA                                                                                                         <  2:857415/54‑1                                                                                                                               CACGATTAACGTACGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAA                                                                                                         >  1:857415/1‑54                                                                                                                                ACGATTAACGTACGGGTCGTTTTTATTTATTTCTTATTCCCATTATACAGCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTAATATAACAATCTAAACATAAAAACTTTTAACACAACACTTAAACC                 >  2:85291/1‑141                                                                                                                                  GATTAACGTACGGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTAATATAACAATCTAAACATAAAAACTTTTAACACAACACTTAAACCAA               >  1:753789/1‑141                                                                                                                                             GGGTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTAATATAACAATCTAAACATAAAAACTTTTAACACAACACTTAAACCAATGCTTTAATTT    <  2:848712/141‑1                                                                                                                                               GTCGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTAATATAACAATCTAAACATAAAAACTTTTAACACAACACTTAAACCAATGCTTTAATTTTC  <  2:347776/141‑1                                                                                                                                                                                                                                                                                             TTAAGTGTTGTGTTAAAAGTTTTTATGTTTAGATTGTTATATTACTATGTATTCTTAAATTTGTTTAAAAAATTAATGCTTTAAATTGATGTATAATGGGAATAAGAAATAAATAAAAACGACCCGCACGATTAACGTACGGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/854524‑854380 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggtcGTTTTTATTTATTTCTTATTCCCATTATACATCAATTTAAAGCATTAATTTTTTAAACAAATTTAAGAATACATAGTAATATAACAATCTAAACATAAAAACTTTTAACACAACACTTAAACCAATGCTTTAATTTTC  >  CP000730/854405‑854542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.