| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 1084754 = | 80 (0.810) | 4 (0.040) | 3/238 | NT | 5.1% | intergenic (+126/+139) | purD/USA300HOU_1019 | phosphoribosylamine‑‑glycine ligase/ABC superfamily ATP binding cassette transporter, membrane protein |
| ? | CP000730 | 1084817 = | 74 (0.810) | intergenic (+189/+76) | purD/USA300HOU_1019 | phosphoribosylamine‑‑glycine ligase/ABC superfamily ATP binding cassette transporter, membrane protein | |||||
TGTAGGTTAAATTTTATCCATAATTGTATAGATACTAAATTAGAAATTCATTGTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1084902‑1084754‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctcttttgtTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACGACCAAGACGAACATCATCTATGCCCGTGATGGGTAAGGTGATTGAACA > CP000730/1084817‑1084952 TGTAGGTTAAATTTTATCCATAATTGTATAGATACTAAATTAGAAATTCATTGTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCC < 1:254859/141‑1 GTAGGTTAAATTTTATCCATAATTGTATAGATACTAAATTAGAAATTCATTGTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCT > 2:760324/1‑141 AGGTTAAATTTTATCCATAATTGTATAGATACTAAATTAGAAATTCATTGTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCT < 1:360076/141‑1 AGGTTAAATTTTATCCATAATTGTATAGATACTAAATTAGAAATTCATTGTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCT > 2:367226/1‑141 GGTTAAATTTTATCCATAATTGTATAGATACTAAATTAGAAATTCATTGTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTT < 1:397070/141‑1 GTTAAATTTTATCCATAATTGTATAGATACTAAATTAGAAATTCATTGTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTT < 2:732984/141‑1 TTAAATTTTATCCATAATTGTATAGATACTAAATTAGAAATTCATTGTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTT > 1:161920/1‑141 TAAATTTTATCCATAATTGTATAGATACTAAATTAGAAATTCATTGTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTG < 1:319397/141‑1 AAATTTTATCCATAATTGTATAGATACTAAATTAGAAATTCATTGTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGTCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGT < 2:116020/141‑1 CATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATAC > 2:471364/1‑141 TGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTCCACG > 2:647459/1‑141 ACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACGACCAAGAC > 1:885336/1‑141 ACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCCATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACGACCAAGAC > 2:513734/1‑141 CCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACGACCAAGACGAACATCATCTATGCCCGTGATGGGTAAGGTGATT < 1:530564/141‑1 CTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACGACCAAGACGAACATCATCTATGCCCGTGATGGGTAAGGTGATTG < 2:254859/141‑1 CTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACGACCAAGACGAACATCATCTATGCCCGTGATGGGTAAGGTGATTG > 1:90551/1‑141 CTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACGACCAAGACGAACATCATCTATGCCCGTGATGGGTAAGGTGATTGAA < 2:319397/141‑1 TTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACGACCAAGACGAACATCATCTATGCCCGTGATGGGTAAGGTGATTGAAC < 1:1186134/141‑1 TTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACGACCAAGACGAACATCATCTATGCCCGTGATGGGTAAGGTGATTGAACA > 1:863843/1‑141 TTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACGACCAAGACGAACATCATCTATGCCCGTGATGGGTAAGGTGATTGAACA < 1:739284/141‑1 TTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACGACCAAGACGAACATCATCTATGCCCGTGATGGGTAAGGTGATTGAACA < 2:917127/141‑1 TTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAACTTAGTATCTATACAATTATGGATAAAATTTAACCTACACGACCAAGACGAACATCATCTATGCCCGTGATGGGTAAGGTGATTGAACA < 2:427295/141‑1 TGTAGGTTAAATTTTATCCATAATTGTATAGATACTAAATTAGAAATTCATTGTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1084902‑1084754‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctcttttgtTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACGACCAAGACGAACATCATCTATGCCCGTGATGGGTAAGGTGATTGAACA > CP000730/1084817‑1084952 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |