| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 1443583 | 78 (0.790) | 4 (0.040) | 3/248 | NT | 7.2% | intergenic (‑156/+197) | USA300HOU_1341/brnQ2 | IS1272 transposase/LIVCS family branched chain amino acid:cation symporter |
| ? | CP000730 | 2317554 = | 28 (0.290) | intergenic (+207/+1909) | rhbC/asp23 | possible Iuc family aerobactin synthesis protein/alkaline shock protein 23 | |||||
TAATTTAGTTTAGTAGTATTTATTAAATTATACGAAGGGATCCAACACAGAAAATTTATTTTATTGAATTTTACATTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1443440‑1443583‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatacTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAAGAC > CP000730/2317554‑2317692 TAATTTAGTTTAGTAGTATTTATTAAATTATACGAAGGGATCCAACACAGAAAATTTATTTTATTGAATTTTACATTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAA < 1:89476/141‑1 AATTTAGTTTAGTAGTATTTATTAAATTATACGAAGGGATCCAACACAGAAAATTTATTTTATTGAATTTTACATTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAAT < 1:72964/141‑1 TAGTTTAGTAGTATTTATTAAATTATACGAAGGGATCCAACACAGAAAATTTATTTTATTGAATTTTACATTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACTa < 1:541518/141‑2 GTAGTATTTATTAAATTATACGAAGGGATCCAACACAGAAAATTTATTTTATTGAATTTTACATTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACTACGTATTa > 2:366067/1‑140 TTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACATGTTAATACGTAGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCAT < 2:1155817/141‑1 TGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACG < 1:949216/141‑1 TCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACTTCGTATTGAATGGCTTCGCTTTCCTTGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTA < 1:813451/141‑1 AATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAA > 1:112955/1‑141 AATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAA < 2:453052/141‑1 AATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAA > 2:902821/1‑141 ATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAAG < 2:605631/141‑1 ACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGG < 1:388839/49‑1 ACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGG > 2:388839/1‑49 ACTTCGGATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAAGAC < 2:33147/141‑1 TAATTTAGTTTAGTAGTATTTATTAAATTATACGAAGGGATCCAACACAGAAAATTTATTTTATTGAATTTTACATTTATGTGCAAGTTGGGCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1443440‑1443583‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatacTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAAGAC > CP000730/2317554‑2317692 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |