New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 2850830103 (1.040)4 (0.050) 4/230 NT 3.9% intergenic (+29/+90) pcp/USA300HOU_2693 C15 family pyroglutamyl‑peptidase I/hypothetical protein
?CP000730 = 2850851 104 (1.180)intergenic (+50/+69) pcp/USA300HOU_2693 C15 family pyroglutamyl‑peptidase I/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

AGGTCATTGGTAAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2850677‑2850830
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaaagcaccctaa‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACTATCTTTTCTAA  <  CP000730/2850851‑2850712
                                                                                                                                                                                                                                                                                                        
AGGTCATTGGTAAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAAC                                                                                                                                                             <  2:147203/141‑1
       TGGTAAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCA                                                                                                                                                      <  1:520871/141‑1
        GGTGAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGTCACAACGGAATAGTTATAAGTGCACAAACAAAAGCAC                                                                                                                                                     >  2:486742/1‑141
         GTAAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACC                                                                                                                                                    <  1:1129449/141‑1
          TAAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCC                                                                                                                                                   <  1:681804/141‑1
           AAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCT                                                                                                                                                  <  2:366311/141‑1
           AAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCT                                                                                                                                                  >  1:507326/1‑141
           AAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCT                                                                                                                                                  >  2:399353/1‑141
           AAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCT                                                                                                                                                  <  2:422251/141‑1
            AACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCTA                                                                                                                                                 >  2:37571/1‑141
                                          AGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCTAATTTGTTAGACTTAAACTAACAAATTAGGG                                                                                                                   <  2:1171979/141‑1
                                           GATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCTAA‑‑AGTTAGACTTAAACTAACAAATTAGGGTGC                                                                                                                <  2:358638/141‑1
                                                         TGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCT                                                                                                                                                  <  1:1078896/95‑1
                                                         TGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCT                                                                                                                                                  >  2:1078896/1‑95
                                                                                                TACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCTAA‑‑AGTTAGACTTAAACTAACAAATT                                                                                                                       >  1:194419/1‑81
                                                                                                TACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCTAA‑‑AGTTAGACTTAAACTAACAAATT                                                                                                                       <  2:194419/81‑1
                                                                                                                                             AAAAGCACCCTAA‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAAC              <  1:167513/141‑1
                                                                                                                                             AAAAGCACCCTAA‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAAC              <  1:886247/141‑1
                                                                                                                                              AAAGCACCCTAA‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACT             >  1:1084288/1‑141
                                                                                                                                                atcgCCCTAA‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTATTTCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCGAAGCTGCAACTAT           <  2:838070/137‑1
                                                                                                                                                AGCACCCTAA‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACTAT           <  2:310207/141‑1
                                                                                                                                                AGCACCCTAA‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACTAT           <  1:715986/141‑1
                                                                                                                                                  CACCCTAA‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACTATCT         >  2:723226/1‑141
                                                                                                                                                  CACCCTAA‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACTATCT         <  1:375739/141‑1
                                                                                                                                                  CACCCTAA‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACTATCT         <  2:953732/141‑1
                                                                                                                                                  CACCCTAA‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACTATCT         <  2:438296/141‑1
                                                                                                                                                  CACCCTAA‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTAAAACCTGCAACTTTCT         <  2:953739/141‑1
                                                                                                                                                   ACCCTAA‑‑AGTTTGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACTATCTT        >  2:1171962/1‑141
                                                                                                                                                         A‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACTATCTTTTCTAA  <  1:794016/141‑1
                                                                                                                                                         A‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACTATCTTTTCTAA  <  1:196289/141‑1
                                                                                                                                                                                                                                                                                                        
AGGTCATTGGTAAACCCGATACACCATCTATGCCATTAGAAAAGATAGTTGCAGGTTTGACTGCAGCCATTGAAGCTATTTCTAATGATGAGGATTTACACCTAGCCCTGGGCACAACGGAATAGTTATAAGTGCACAAACAAAAGCACCCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2850677‑2850830
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaaagcaccctaa‑‑AGTTAGACTTAAACTAACAAATTAGGGTGCTTTTGTTTGTGCACTTATAACTATTCCGTTGTGCCCAGGGCTAGGTGTAAATCCTCATCATTAGAAATAGCTTCAATGGCTGCAGTCAAACCTGCAACTATCTTTTCTAA  <  CP000730/2850851‑2850712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.