BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	34173 =	92 (0.930)	11 (0.120)	11/246	NT	9.9%	coding (462/480 nt)	orfX	hypothetical protein OrfX
*	?	CP000730	= 57858	113 (1.200)	11 (0.120)	11/246	NT	9.9%	intergenic (+304/+613)	USA300HOU_0048/USA300HOU_0049	hypothetical membrane protein/hypothetical protein

Only 100 of 117 total aligned reads displayed.

GGCGGATCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCATGATTTTTG  >  CP000730/34033‑34311

ggCGGATCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCgcgga                                                                                                                                            >  2:1151296/1‑141 (MQ=255)

ggCGGATCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCgagga                                                                                                                                            >  2:471500/1‑141 (MQ=255)

ggCGGATCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAAGGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCgagga                                                                                                                                            <  1:622816/141‑1 (MQ=255)

 gCGGATCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCgaggag                                                                                                                                           <  2:783165/141‑1 (MQ=255)

  cGGATCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGgaga                                                                                                                                          >  2:1033915/1‑141 (MQ=255)

   tgtattagtttaatcagaagacgtgtctactttgtaagcttctaagaacttattatatgatatagcgtttgagttttgttgttcttctataaatttctgtagttatttttcaaaaaccgcatcattaactgataagcAGaa                                                                                                                                         <  1:1112701‑M1/4‑1 (MQ=255)

   ggATCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGaa                                                                                                                                         >  2:697527/1‑141 (MQ=255)

    gATCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAg                                                                                                                                        >  1:30959/1‑141 (MQ=255)

     tattagtttaatcagaagacgtgtccactatgtaagcttctaagaacttattatatgatatagcggttgagttttgttgttcttctataaatttctgtagttatttttcataaacagcattattaactgataagcAGAAGc                                                                                                                                       <  2:1129778‑M1/6‑1 (MQ=255)

      tCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGcg                                                                                                                                      <  2:991008/141‑2 (MQ=255)

          aCGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATc                                                                                                                                  >  1:754280/1‑141 (MQ=255)

              ccTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATaa                                                                                                                              >  1:222183/1‑141 (MQ=255)

                  cacaAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAatga                                                                                                                          >  1:403561/1‑141 (MQ=255)

                      gacgtgtctactttgtaagcttctaagaacttattatatgatatagcgtttgagttttgttgttcttctataaatttctgtagttatttttcaaaaaccgcatcattaactgataagcAGAAGCATATCATAAATTATGCg                                                                                                                      >  1:1052774‑M1/119‑141 (MQ=255)

                        gACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGt                                                                                                                    >  1:413565/1‑141 (MQ=255)

                          cGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGttt                                                                                                                  <  2:232499/141‑1 (MQ=255)

                           gTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAATTGATGCGGtttt                                                                                                                 >  1:718792/1‑141 (MQ=255)

                           gTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGtttt                                                                                                                 >  1:304526/1‑141 (MQ=255)

                             cTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGtttttt                                                                                                               >  2:239947/1‑141 (MQ=255)

                             cTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGtttttt                                                                                                               >  2:563993/1‑141 (MQ=255)

                              ttACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTc                                                                                                              >  1:78886/1‑141 (MQ=255)

                              ttACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTc                                                                                                              >  2:1170108/1‑141 (MQ=255)

                                aCAACGCAGTAACTACGCACTATCATTCAGCGAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTACGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAg                                                                                                            >  2:819772/1‑141 (MQ=255)

                                aCAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAg                                                                                                            <  1:713746/141‑1 (MQ=255)

                                aCAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTAAACAACGGTACAGAGCAGGAAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAg                                                                                                            >  1:832961/1‑141 (MQ=255)

                                        gcttctaagaacttattatatgatatagcgtttgagttttgttgttcttctataaatttctgtagttatttttcaaaaaccgcatcattaactgataagcAGAAGCATAACATAATTGAAGCGTTTTTTTCAGCCGCTTCa                                                                                                    >  2:600570‑M1/101‑141 (MQ=255)

                                        gTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCATCCGCTTCa                                                                                                    >  2:609488/1‑141 (MQ=255)

                                        gTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCa                                                                                                    >  1:31085/1‑141 (MQ=255)

                                         tAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAGTGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCAt                                                                                                   <  2:104688/141‑1 (MQ=255)

                                              aCGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAgg                                                                                              <  1:937576/141‑1 (MQ=255)

                                              aCGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAgg                                                                                              <  1:732471/141‑1 (MQ=255)

                                              aCGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCAGATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAgg                                                                                              <  2:752913/141‑1 (MQ=255)

                                              aCGCACTATCATTCAGCAAAATGACATTCCAACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAACgg                                                                                              >  2:100497/1‑141 (MQ=255)

                                              aCGCACTATCATTCAGCAAAATGACATTCCAACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAgg                                                                                              <  1:1181276/141‑1 (MQ=255)

                                               cGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAggg                                                                                             <  1:163555/141‑1 (MQ=255)

                                                     aTCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTCATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATGTTg                                                                                       >  1:784670/1‑141 (MQ=255)

                                                      tCAATCANAAAAATGAAATACACACATCCCATCACGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGCGCAGCCTAAAAAAACAGACCCCGTTTCTTCAGCCGCTCCATAACGGGATTTTGa                                                                                      <  2:894503/141‑1 (MQ=255)

                                                           cAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAGTTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTa                                                                                 <  2:115939/141‑1 (MQ=255)

                                                           cAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTa                                                                                 <  2:47446/141‑1 (MQ=255)

                                                             gCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATc                                                                               <  2:1109158/141‑1 (MQ=255)

                                                               aaaaTGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCTTATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAg                                                                             >  1:675554/1‑141 (MQ=255)

                                                               aaaaTGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAg                                                                             >  2:26990/1‑141 (MQ=255)

                                                                aaaTGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCaaa                                                                            <  2:728580/141‑3 (MQ=255)

                                                                  aTGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTGTGAATGTATCAGAAc                                                                          >  1:907364/1‑141 (MQ=255)

                                                                     aataacccgcatcatTTGATGTGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACata                                                                       <  2:1057024/132‑1 (MQ=39)

                                                                     aCATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGGGGCATAGCAGAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACata                                                                       >  1:237276/1‑141 (MQ=255)

                                                                     aCATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACata                                                                       >  2:1064654/1‑141 (MQ=255)

                                                                     aCATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACata                                                                       >  2:177317/1‑141 (MQ=255)

                                                                     aCATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACata                                                                       >  1:1046758/1‑141 (MQ=255)

                                                                      cATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACatat                                                                      <  1:521170/141‑1 (MQ=255)

                                                                      cATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTCTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACatat                                                                      >  1:52943/1‑141 (MQ=255)

                                                                        ttCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGa                                                                    >  2:464231/1‑141 (MQ=255)

                                                                        ttCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGa                                                                    <  2:746839/141‑1 (MQ=255)

                                                                        ttCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGa                                                                    <  1:632160/141‑1 (MQ=255)

                                                                        ttCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGa                                                                    >  2:1104547/1‑141 (MQ=255)

                                                                        ttCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGAATTTGAATGTATCAGAACATATGa                                                                    >  2:174336/1‑141 (MQ=255)

                                                                            cacaTCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGtt                                                                <  2:225941/141‑1 (MQ=255)

                                                                            cacaTCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGtt                                                                >  2:660312/1‑141 (MQ=255)

                                                                                tCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATgtataaatca                                                            >  1:358697/1‑132 (MQ=255)

                                                                                tCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTAtg                                                            <  2:625062/141‑1 (MQ=255)

                                                                                tCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTAtg                                                            <  2:332701/141‑1 (MQ=255)

                                                                                  aaaTGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTAtgtg                                                          <  1:659045/141‑1 (MQ=255)

                                                                                  aaaTGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTAtgtg                                                          <  1:107008/141‑1 (MQ=255)

                                                                                   tttgatgTGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATAAGAACATATGAGGTTTATGTGa                                                         >  2:514656/3‑141 (MQ=255)

                                                                                   aaTGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGa                                                         >  1:1142790/1‑141 (MQ=255)

                                                                                    atgatgCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGTATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGATTATGTGaa                                                        >  2:207824/1‑141 (MQ=255)

                                                                                    atgatgCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGaa                                                        <  1:1180633/141‑1 (MQ=255)

                                                                                     tcttctataaatttctgtagttatttttcaaaaaccgcatcattaactgataagcAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAAt                                                       <  1:1004734‑M1/86‑1 (MQ=255)

                                                                                      gatgCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAAtt                                                      >  1:892663/1‑141 (MQ=255)

                                                                                         gCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCt                                                   >  1:436433/1‑141 (MQ=255)

                                                                                                 tgtTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGtt                                           >  2:235820/1‑141 (MQ=255)

                                                                                                        tGAACAANTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGCGGTTTATGTGAATGGCTGTTATGTTTTTaaga                                    <  2:898155/141‑1 (MQ=255)

                                                                                                        tGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTaata                                    <  1:930912/141‑3 (MQ=255)

                                                                                                        tGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTaaga                                    <  1:1029754/141‑1 (MQ=255)

                                                                                                            cAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCt                                >  2:928669/1‑141 (MQ=255)

                                                                                                             aaGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATGTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCtt                               >  1:1129168/1‑141 (MQ=255)

                                                                                                               gtgtACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTAt                             <  2:412702/141‑1 (MQ=255)

                                                                                                                   aCAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATa                         >  1:202961/1‑141 (MQ=255)

                                                                                                                   aCAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATa                         >  1:1056254/1‑141 (MQ=255)

                                                                                                                   aCAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATa                         >  1:998559/1‑141 (MQ=255)

                                                                                                                   aCAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATa                         >  2:705769/1‑141 (MQ=255)

                                                                                                                    aaaccgcatcattaaccgatacgcAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTATGTAGCTTTTCATaa                        <  2:868675‑M1/117‑1 (MQ=255)

                                                                                                                     agagCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAg                       >  2:1007084/1‑141 (MQ=255)

                                                                                                                         gcatcattaaccgatacgcAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTGTGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAAt                   <  1:938294‑M1/122‑1 (MQ=255)

                                                                                                                          aTTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATg                  <  1:229047/141‑1 (MQ=255)

                                                                                                                           tttAAGATTATGCGAGGAGAAGCCTATCAGAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGa                 >  1:279132/1‑141 (MQ=255)

                                                                                                                           tttAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGa                 >  2:510360/1‑141 (MQ=255)

                                                                                                                           tttAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGa                 >  2:868729/1‑141 (MQ=255)

                                                                                                                            tcattaactgataagcAGAAGCATATCATAAATGATGCGGTTTTTTTTTTTTTTTTTTAAAGTGAATTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGATGTTATGTTTTTAAGACGCTTATCATAAGTAATGAg                <  2:248483‑M1/125‑1 (MQ=255)

                                                                                                                                taactgataagcAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTc            >  2:1004734‑M1/13‑141 (MQ=255)

                                                                                                                                gATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTc            <  2:711589/141‑1 (MQ=255)

                                                                                                                                gATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTc            >  1:940487/1‑141 (MQ=255)

                                                                                                                                gATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTc            <  2:936022/141‑1 (MQ=255)

                                                                                                                                  ttATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCAt          >  2:387111/1‑141 (MQ=255)

                                                                                                                                  actgataagcAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCAt          >  1:451423‑M1/11‑141 (MQ=255)

                                                                                                                                     tGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCATGAt       >  1:739381/1‑141 (MQ=255)

                                                                                                                                        gaggagAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCATGGtttt    <  2:693108/141‑1 (MQ=255)

                                                                                                                                         aggagAAGCATATCATAAATGATGCGGTTTTTTCATCCGCTTAATAAAGGGATTTTGAATGTATCAGAACATATGAGGGTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCATGAttttt   >  1:1024770/1‑141 (MQ=255)

                                                                                                                                          ggagAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCATGATTTTTg  >  1:193792/1‑141 (MQ=255)

                                                                                                                                          ggagAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCATGATTTTTg  >  1:193996/1‑141 (MQ=255)

GGCGGATCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCATGATTTTTG  >  CP000730/34033‑34311

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.