BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	34173 =	92 (0.930)	11 (0.120)	11/246	NT	9.9%	coding (462/480 nt)	orfX	hypothetical protein OrfX
*	?	CP000730	= 57858	113 (1.200)	11 (0.120)	11/246	NT	9.9%	intergenic (+304/+613)	USA300HOU_0048/USA300HOU_0049	hypothetical membrane protein/hypothetical protein

Only 100 of 134 total aligned reads displayed.

TGTATTAGTTTAATCAGAAGACGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAACTGCTTTT  >  CP000730/57722‑57997

tGTATTAGTTTAATCAGAAGACGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCagaa                                                                                                                                          <  1:1112701‑M2/141‑5 (MQ=255)

  tATTAGTTTAATCAGAAGACGTGTCCACTATGTAAGCTTCTAAGAACTTATTATATGATATAGCGGTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCATAAACAGCATTATTAACTGATAAGCagaagc                                                                                                                                        <  2:1129778‑M2/141‑7 (MQ=255)

      aGTTTAATCAGAAGACGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTAt                                                                                                                                    <  2:838605/141‑1 (MQ=255)

      aGTTTAATCAGAAGACGTGTCTACATTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTAt                                                                                                                                    >  2:717764/1‑141 (MQ=255)

       gTTTAATCAGAAGACGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATc                                                                                                                                   <  2:164754/141‑1 (MQ=255)

         ttAATCAGAAGACGTGTCTACTTTGTAAGTTTTTATGAACTTATTATATGATATAGAGTTTGAGTTTTTTTGTTCTTTTATAATTTTCAGTATTTATTTTTTAAAAAGCACTTATTTATCTGATAAAAAGAAGCGTATcac                                                                                                                                 >  2:599158/1‑141 (MQ=255)

           aaTCAGAAGACGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCagaagcatatcataa                                                                                                                               >  1:724‑M2/1‑126 (MQ=255)

           aaTCAGAAGACGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACaa                                                                                                                               >  2:452316/1‑141 (MQ=255)

           aaTCAGAAGACGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACaa                                                                                                                               >  2:1015001/1‑141 (MQ=255)

           aaTCAGAAGACGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACaa                                                                                                                               >  2:1085518/1‑141 (MQ=255)

           aaTCAGAAGACGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACaa                                                                                                                               >  1:56196/1‑141 (MQ=255)

                  agaCGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTCCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAAc                                                                                                                        <  2:111893/141‑1 (MQ=255)

                   gaCGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCagaagcatatcataaattatgcg                                                                                                                       >  1:1052774‑M2/1‑118 (MQ=255)

                     cGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTaa                                                                                                                     >  1:96459/1‑141 (MQ=255)

                     aatgtCTACTTTTTAAGCTTCTAAGAACTTATTATATGATATATCGTTTGAGTTTTGTTGTTCATCTATAAATTTCTGTAGTTATTTTTCAAAAAACGCATCATTAACTGATAAGCAGAAGCTTATAAAAAATAAAACTaa                                                                                                                     <  2:1192358/139‑1 (MQ=255)

                      gtgtCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTAAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTaaa                                                                                                                    <  2:690333/141‑1 (MQ=255)

                        gtCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTaaaaa                                                                                                                  <  1:556367/141‑1 (MQ=255)

                         tCTACTTTGTAAGCTTCTCAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTaaaaaa                                                                                                                 >  2:1193072/1‑141 (MQ=255)

                         tCTACTTTGTAAGCTTCTAAGAACTTATTATATAATATAGCCTTTGATTTTTTTTGTTCTTCTATAAATTTCTGAAAAAAAAAAAAAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTaaaaaa                                                                                                                 <  2:1147422/141‑1 (MQ=25)

                              tttGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGAt                                                                                                            <  1:181223/141‑1 (MQ=255)

                               ttGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGAtt                                                                                                           >  1:931002/1‑141 (MQ=255)

                                tGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATtg                                                                                                          <  1:767221/141‑1 (MQ=255)

                                 gTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATtgt                                                                                                         >  1:88281/1‑141 (MQ=255)

                                 gTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATtgt                                                                                                         >  1:833664/1‑141 (MQ=255)

                                 gTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATtgt                                                                                                         >  2:517598/1‑141 (MQ=255)

                                 gTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATtgt                                                                                                         >  2:614622/1‑141 (MQ=255)

                                  tAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATtgtg                                                                                                        >  2:477576/1‑141 (MQ=255)

                                    aGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGta                                                                                                      >  1:542027/1‑141 (MQ=255)

                                    aGCTTCTAAGAACTTACTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGta                                                                                                      >  1:466862/1‑141 (MQ=255)

                                     gCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGtat                                                                                                     <  1:691198/141‑1 (MQ=255)

                                     gCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGtat                                                                                                     <  1:363070/141‑1 (MQ=255)

                                     gCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGtat                                                                                                     <  2:729508/141‑1 (MQ=255)

                                       ttCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTTTTTTTTTTCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGtataa                                                                                                   >  2:76802/1‑141 (MQ=255)

                                       ttCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGtataa                                                                                                   >  1:797048/1‑141 (MQ=255)

                                         cTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGtataata                                                                                                 >  1:441177/1‑141 (MQ=255)

                                         cTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGtataata                                                                                                 >  1:441156/1‑141 (MQ=255)

                                            aGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGtataata‑taa                                                                                             >  2:726539/1‑141 (MQ=255)

                                                 ttattaTATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAaagga                                                                                        >  1:647337/1‑141 (MQ=255)

                                                  tattatATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAaaggaa                                                                                       <  1:549534/141‑1 (MQ=255)

                                                   attatATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAaaggaag                                                                                      >  1:954961/1‑141 (MQ=255)

                                                     tataTGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTTTTTTTTTTTATCATTAACTGATAAGCACAAGATTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAaaggaaggt                                                                                    >  2:958595/1‑140 (MQ=255)

                                                     tataTGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATATTAAaaggaagg                                                                                     >  2:776497/1‑141 (MQ=255)

                                                      atatGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGa                                                                                   >  2:162256/1‑141 (MQ=255)

                                                       tatGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGAt                                                                                  >  1:58789/1‑141 (MQ=255)

                                                         tGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATACTA‑TATCAGGAAGGGAttt                                                                                >  2:1069407/1‑141 (MQ=255)

                                                         tGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGAttt                                                                                <  2:656300/141‑1 (MQ=255)

                                                           atatAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTtat                                                                              >  1:956312/1‑141 (MQ=255)

                                                             ataGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTatat                                                                            <  2:778037/141‑1 (MQ=255)

                                                               aGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTATTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTa                                                                          <  1:125757/141‑1 (MQ=255)

                                                                gCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTaa                                                                         >  2:332117/1‑141 (MQ=255)

                                                                gCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTaa                                                                         >  1:227751/1‑141 (MQ=255)

                                                                 cGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTaaa                                                                        >  2:582604/1‑141 (MQ=255)

                                                                  gTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAAAAAAAAAAAAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTaaaa                                                                       <  2:250077/141‑1 (MQ=38)

                                                                   tttGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAAt                                                                      >  1:790914/1‑141 (MQ=255)

                                                                     tGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTTTTTTTTTTTATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAAttt                                                                    >  2:584936/1‑141 (MQ=255)

                                                                        gTTTTGTTGTTCTTCTATAAATTTCTGTAGATAAAATACAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGa                                                                 <  2:367747/141‑1 (MQ=39)

                                                                          tttGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAAt                                                               <  1:688300/141‑1 (MQ=255)

                                                                           ttgttgTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAAtt                                                              <  1:1063596/141‑1 (MQ=255)

                                                                            tgttgtTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTc                                                             >  2:646841/1‑141 (MQ=255)

                                                                            tgttgtTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTc                                                             >  2:1077628/1‑141 (MQ=255)

                                                                               tgttCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCaaa                                                          >  2:538385/1‑141 (MQ=255)

                                                                                gttCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCaaaa                                                         >  2:151629/1‑141 (MQ=255)

                                                                                  tcttctATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCagaagcatatcataaatgatgcggttttttcagccgcttcataaagggattttgaatgtatcagaacatatgaggtttatgtgaat                                                        <  1:1004734‑M2/141‑87 (MQ=255)

                                                                                  tcttctATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAat                                                       <  2:955454/141‑1 (MQ=255)

                                                                                  tcttctATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAat                                                       <  2:1112701/141‑1 (MQ=255)

                                                                                  tcttctATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGGATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAat                                                       >  2:389126/1‑141 (MQ=255)

                                                                                   cttctATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAatt                                                      >  2:1044001/1‑141 (MQ=255)

                                                                                      ctATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAattatt                                                   >  2:1045638/1‑141 (MQ=255)

                                                                                      ctATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTAATATTAAAATTTTGAATTCAAAAaatatt                                                   >  2:353886/1‑141 (MQ=255)

                                                                                        ataAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGa                                                 >  1:1105355/1‑141 (MQ=255)

                                                                                         taAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGaa                                                >  2:798363/1‑141 (MQ=255)

                                                                                             tttCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCagaagcatatcataaatgatgcggttttttcagccgcttcataaagggattttgaatgtatcagaacatatgaggtttatgtgaattgctgttatgt                                             <  1:1063979‑M2/141‑98 (MQ=255)

                                                                                             tttCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAggg                                            >  2:728229/1‑141 (MQ=255)

                                                                                              ttCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑GAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGa                                           >  1:369952/1‑141 (MQ=255)

                                                                                               tCTGTAGTGATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAACGGGaa                                          <  2:828464/141‑1 (MQ=255)

                                                                                                 tGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGc                                        >  1:138825/1‑141 (MQ=255)

                                                                                                     gTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTAcc                                    <  1:482675/141‑1 (MQ=255)

                                                                                                     gTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTAcc                                    <  2:385472/141‑1 (MQ=255)

                                                                                                      ttATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCt                                   <  1:568610/141‑1 (MQ=255)

                                                                                                       tATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCtt                                  <  2:166678/141‑1 (MQ=255)

                                                                                                            ttCAAAAACCGCATCATTAACTGATAAGCAGAAGTGTATAACAACTGTAATTCATCCTTCGATTGCGTGTCGTT‑TAAAAGGAAGGGATTTTTATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGaac                             <  1:1129778/141‑2 (MQ=255)

                                                                                                            ttCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGaaa                             >  2:886905/1‑141 (MQ=255)

                                                                                                             tCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAAt                            <  1:53453/141‑1 (MQ=255)

                                                                                                              cAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAAtt                           >  1:26084/1‑141 (MQ=255)

                                                                                                               aaaaaCCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTg                          >  1:601477/1‑141 (MQ=255)

                                                                                                                 aaaCCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGaa                        >  2:883526/1‑141 (MQ=255)

                                                                                                                 aaaCCGCATCATTAACCGATACGCagaagcatatcataaatgatgcggttttttcagccgcttcataaagggattttgaatgtatcagaacatatgaggtttatgtgaattgctgttatgtttttatgtagcttttcataa                         <  2:868675‑M2/141‑118 (MQ=255)

                                                                                                                   aCCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATc                      >  2:1146508/1‑141 (MQ=255)

                                                                                                                     cGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTa                    >  2:1105544/1‑141 (MQ=255)

                                                                                                                     cGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTa                    >  2:403319/1‑141 (MQ=255)

                                                                                                                     cGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTa                    >  1:1020869/1‑141 (MQ=255)

                                                                                                                     cGCAGCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATCTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTACAAATTGAATCTa                    >  2:407994/1‑141 (MQ=255)

                                                                                                                        atcatTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATgg                 >  1:575039/1‑141 (MQ=255)

                                                                                                                         tcatTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGc                >  1:331378/1‑141 (MQ=255)

                                                                                                                            ttAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCAc             <  1:407267/141‑1 (MQ=255)

                                                                                                                             tAACTGATAAGCagaagcatatcataaatgatgcggttttttcagccgcttcataaagggattttgaatgtatcagaacatatgaggtttatgtgaattgctgttatgtttttaagaagcttatcataagtaatgaggttc             >  2:1004734‑M2/1‑12 (MQ=255)

                                                                                                                              aaCTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTa           >  2:601574/1‑141 (MQ=255)

                                                                                                                               aCTGATAAGCagaagcatatcataaatgatgcggttttttcagccgcttcataaagggattttgaatgtatcagaacatatgaggtttatgtgaattgctgttatgtttttaagaagcttatcataagtaatgaggttcat           >  1:451423‑M2/1‑10 (MQ=255)

                                                                                                                                     aaGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAACTGCtt    >  1:1016369/1‑141 (MQ=255)

                                                                                                                                     aaGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAACTGCtt    <  1:97866/141‑1 (MQ=255)

TGTATTAGTTTAATCAGAAGACGTGTCTACTTTGTAAGCTTCTAAGAACTTATTATATGATATAGCGTTTGAGTTTTGTTGTTCTTCTATAAATTTCTGTAGTTATTTTTCAAAAACCGCATCATTAACTGATAAGCAGAAGCGTATCACAAATAAAACTAAAAAATAGATTGTGTATAATA‑TAAAAGGAAGGGATTTATATTAAAATTTTGAATTCAAAAATTATTGAAAGGGAAGCTACCTTAGAAATTGAATCTATGGCCACTAACTGCTTTT  >  CP000730/57722‑57997

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.