BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2693368 =	85 (0.860)	6 (0.070)	5/234	NT	7.6%	intergenic (+39/+38)	USA300HOU_2547/USA300HOU_2548	TetR family transcriptional regulator/hypothetical protein
*	?	CP000730	2693417 =	69 (0.770)	6 (0.070)	5/234	NT	7.6%	coding (157/168 nt)	USA300HOU_2548	hypothetical protein

Only 100 of 110 total aligned reads displayed.

ATTGAAGGTTTTATACATTGGATAAAAGATGAAAAAATTGATTGGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACT  >  CP000730/2693228‑2693504

aataataatgggaattgtattagcaatttggtcatttaaacaactgagtcaaagtcatttagatagcggatttatttttttcttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataa                                                                                                                                             >  1:686796‑M1/141‑141 (MQ=255)

aataataatgggaattgtattagcaatttggtcatttaaacaactgagtcaaagtcatttagatagcggatttatttttttcttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataa                                                                                                                                             >  2:732704‑M1/141‑141 (MQ=255)

 ataataatgggaattgtattagcaatttggtcatttaaacaactgagtcaaagtcatttagatagcggatttatttttttcttcatagtttatgtgttgtgtattagttgtttgaatagcgataagcatgataaaaataaa                                                                                                                                            <  1:531887‑M1/2‑1 (MQ=255)

 ataataatgggaattgtattagcaatttggtcatttaaacaactgagtcaaagtcatttagatagcggatttatttttttcttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataaa                                                                                                                                            <  2:687936‑M1/2‑1 (MQ=255)

 ataataatgggaattgtattagcaatttggtcatttaaacaactgagtcaaagtcatttagatagcggatttatttttttcttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataaa                                                                                                                                            <  2:292098‑M1/2‑1 (MQ=255)

 ataataatgggaattgtattagcaatttggtcatttaaacaactgagtcaaagtcatttagatagcggatttatttttttcttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataaa                                                                                                                                            <  1:843174‑M1/2‑1 (MQ=255)

  tgaAGGTTTTATACATTGGATAAAAGATGAAAAAATTGATTGGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATaaa                                                                                                                                           <  1:852017/141‑1 (MQ=255)

  tcaaGGTTTTATACATGGGATAAAAGATGAAAAAATTGATTGGCCAGGCGAAGTTAATGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATaaa                                                                                                                                           >  2:718013/3‑141 (MQ=255)

    ataatgggaattgtattagcaatttggtcatttaaacaactgagtcaaagtcatttagatagcggatttatttttttcttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataaaaaa                                                                                                                                         >  2:336676‑M1/137‑141 (MQ=255)

     aGGTTTTATACATTGGATAAAAGATGAAAAAATTGATTGGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAAc                                                                                                                                        >  2:375335/1‑141 (MQ=255)

      aatgtgaattgtattagcaatttggtcatttaaacaactgagtcaaagtcatttagatagcggatttatttttttcttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataAAAAACg                                                                                                                                       >  2:1058709‑M1/135‑141 (MQ=255)

      aatgggaattgtattagcaatttggtcatttaaacaactgagtcaaagtcatttagatagcggatttatttttttcttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataAAAAACg                                                                                                                                       >  1:539767‑M1/135‑141 (MQ=255)

        tgggaattgtattagccatttggtcatttaaacaaatgagtcaaagtcatttagataacggatttatttttttcttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataAAAAACGAt                                                                                                                                     <  2:708480‑M1/9‑1 (MQ=255)

        tgggaattgtattagcaatttggtcatttaaacaactgagtcaaagtcatttagatagcggatttatttttttcttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataAAAAACGAt                                                                                                                                     >  1:1059385‑M1/133‑141 (MQ=255)

         gggaattgtattagcaatttggtcatttaaacaactgagtcaaagtcatttagatagcggatttatttttttcttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataAAAAACGATa                                                                                                                                    >  2:319143‑M1/132‑141 (MQ=255)

          ttATACATTGGATAAAAGATGAAAAAATTGATTGGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAg                                                                                                                                   <  1:704813/141‑1 (MQ=255)

             taCATTGGATAAAAGATGAAAAAATTGATTGGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAgt‑gt                                                                                                                               <  1:1016299/141‑1 (MQ=255)

               cATTGGATAAAAGATGAAAAAATTGATTGGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGAGTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTac                                                                                                                             >  1:1014599/1‑141 (MQ=255)

                 ttGGATAAAAGATGAAAAAATTGATTGGCCTGGCGAAGATATTGATAACATTTTCCATAGCTTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTacac                                                                                                                           >  2:949991/1‑141 (MQ=255)

                 ttGGATAAAAGATGAAAAAATTGATTGGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTCGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTacac                                                                                                                           >  2:949977/1‑141 (MQ=255)

                      tAAAAGATGAAAAAATTGATTGGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTaa                                                                                                                    >  1:875984/1‑141 (MQ=255)

                       aaaaGATGAAAAAATTGATTGGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAAt                                                                                                                   >  1:93374/1‑141 (MQ=255)

                       aaaaGATGAAAAAATTGATTGGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAAt                                                                                                                   <  2:179294/141‑1 (MQ=255)

                         aaGATGAAAAAATTGATTGGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGa                                                                                                                 >  1:708480/1‑141 (MQ=255)

                          atacaaaaaaaTTGAGTGGCCTGGCGAAGATATTCATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGaa                                                                                                                <  2:425573/136‑1 (MQ=255)

                            aTGAAAAAATTGATTGGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAAtt                                                                                                              <  1:387672/141‑1 (MQ=255)

                            aTGAAAAAATTGATTGGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGAGGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAAtt                                                                                                              <  1:771499/141‑1 (MQ=255)

                              gAAAAAATTGATTGGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCg                                                                                                            >  2:357921/1‑141 (MQ=255)

                                 aaaaTTGATTGGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCgcgt                                                                                                         <  1:688866/141‑4 (MQ=255)

                                  aaaTTGATTGGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGta                                                                                                        >  1:148015/1‑141 (MQ=255)

                                   ttaaacaactgagtcaaagtcatttagatagcggatttatttttttcttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGtac                                                                                                       >  2:1163091‑M1/106‑141 (MQ=255)

                                   aaTTGATTGGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGtac                                                                                                       >  2:1180424/1‑141 (MQ=255)

                                     ttgattgGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGtacta                                                                                                     >  1:665440/1‑141 (MQ=255)

                                      aacaactgagtcaaagtcatttagatagcggatttatttttttcttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGtactac                                                                                                    >  2:150595‑M1/103‑141 (MQ=255)

                                      aacaactgagtcaaagtcatttagatagcggatttatttttttcttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGtactac                                                                                                    >  2:627446‑M1/103‑141 (MQ=255)

                                       gattgGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTactact                                                                                                   >  1:116343/1‑141 (MQ=255)

                                       gattgGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTactact                                                                                                   >  2:88516/1‑141 (MQ=255)

                                        attgGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTActacta                                                                                                  >  2:390465/1‑141 (MQ=255)

                                        attgGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTActacta                                                                                                  >  1:100271/1‑141 (MQ=255)

                                         ttgGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTAt                                                                                                 >  2:508443/1‑141 (MQ=255)

                                          tgGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATc                                                                                                <  1:746837/141‑1 (MQ=255)

                                            gCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGt                                                                                              <  1:299482/141‑1 (MQ=255)

                                            gCCTGGANAAGATATTGCTAACATTTTCCATAGATTAATCAGTATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCCTAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGt                                                                                              <  2:892607/141‑1 (MQ=255)

                                             gagtcaaagtcatttagatagcggatttatttttttcttcatagtttatgtgttgtgtatcagttgttttaatagcgataagcacgataaaaataAAAAACGATAGT‑GTACGCG‑‑TTAATGAATTCGTGTACTACTATCGtt                                                                                             >  2:664778‑M1/96‑141 (MQ=255)

                                                 gCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGtttttt                                                                                         <  1:1126384/141‑1 (MQ=255)

                                                  cGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTttttta                                                                                        >  1:195576/1‑141 (MQ=255)

                                                    aaGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTtttttatt                                                                                      <  1:516366/141‑1 (MQ=255)

                                                     aGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTtttttattt                                                                                     <  1:116813/141‑1 (MQ=255)

                                                     aGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTtttttattt                                                                                     >  2:274574/1‑141 (MQ=255)

                                                     aGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTtttttattt                                                                                     <  1:587181/141‑1 (MQ=255)

                                                               aaCATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCt                                                                           >  2:750829/1‑141 (MQ=255)

                                                                  aTTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTttttatttttattttttttat                                                                        >  2:1110713/1‑132 (MQ=255)

                                                                  aTTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTAt                                                                        >  1:969119/1‑141 (MQ=255)

                                                                  aTTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTAt                                                                        >  2:841742/1‑141 (MQ=255)

                                                                     ttCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGc                                                                     >  2:562555/1‑141 (MQ=255)

                                                                     ttCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGc                                                                     <  1:56451/141‑1 (MQ=255)

                                                                      tCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCt                                                                    >  1:1044108/1‑141 (MQ=255)

                                                                       ccATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTTTTTTTTTTTTGTTTATCGCTa                                                                   >  2:238898/1‑141 (MQ=255)

                                                                       ccATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTa                                                                   >  1:835607/1‑141 (MQ=255)

                                                                       ccATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTa                                                                   <  1:71244/141‑1 (MQ=255)

                                                                       ccATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTa                                                                   >  1:521668/1‑141 (MQ=255)

                                                                             aTTAATCAATATTAAGATTAAATAGTAGATGAGAAACGCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTaaaa                                                             <  1:949977/141‑1 (MQ=255)

                                                                              ttAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAaac                                                            <  1:97581/141‑1 (MQ=255)

                                                                                aaTCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAaacaa                                                          <  1:933889/141‑1 (MQ=255)

                                                                                aaTCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAaacaa                                                          <  1:53807/141‑1 (MQ=255)

                                                                                aaTCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAaacaa                                                          <  2:1002122/141‑1 (MQ=255)

                                                                                  tCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATTGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACt                                                        <  2:1034501/141‑1 (MQ=255)

                                                                                     atatTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGAt                                                     >  1:1057505/1‑141 (MQ=255)

                                                                                         tAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGCGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATacac                                                 <  1:254094/141‑1 (MQ=255)

                                                                                          aaGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTACTCGTGCCTATCGCTATTAAAACAACTGATacaca                                                <  2:653492/141‑1 (MQ=255)

                                                                                           aGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATacacaa                                               >  2:456625/1‑141 (MQ=255)

                                                                                            gATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATacacaac                                              <  1:508443/141‑1 (MQ=255)

                                                                                              ttAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATacacaacac                                            >  1:687936/1‑141 (MQ=255)

                                                                                               tAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATacacaacaca                                           <  2:142650/141‑1 (MQ=255)

                                                                                                 aaTAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATa                                         >  1:221561/1‑141 (MQ=255)

                                                                                                 aaTAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATa                                         >  1:130609/1‑141 (MQ=255)

                                                                                                 aaTAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATa                                         <  1:266448/141‑1 (MQ=255)

                                                                                                   tagtagATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATaaa                                       <  2:616456/141‑1 (MQ=255)

                                                                                                    cgtagATGAGAAACTCATGAGCGTTACCCACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCTTGCTCATCGCTATCAAAACAACTAATACACAACACATATAc                                      >  2:964129/2‑141 (MQ=255)

                                                                                                    agtagATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAAc                                      >  2:840924/1‑141 (MQ=255)

                                                                                                     gtagATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACt                                     >  2:458708/1‑141 (MQ=255)

                                                                                                     gtagATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACt                                     <  2:256268/141‑1 (MQ=255)

                                                                                                      tagATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTa                                    >  1:977962/1‑141 (MQ=255)

                                                                                                        gATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTAta                                  <  2:859556/141‑2 (MQ=255)

                                                                                                        gATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAAATCATGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCACTATTAAAACAACTGATACACAACACATaaaaaaaa                                  <  2:935608/141‑6 (MQ=255)

                                                                                                         cagttgttttaatagcgataagcacgataaaaataAAAAACGATAGTAGTACACGAATTCATTAA‑‑CGTGTAC‑ACTATCGTTTTTTATTTTTATCGTGCTTAACGCTATTAAAACAACTGATACACAACACATAAACTATga                                 <  1:398238‑M1/106‑1 (MQ=255)

                                                                                                          tGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATgaa                                <  1:858086/141‑1 (MQ=255)

                                                                                                              aaaCTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGaaa                            <  1:840978/141‑1 (MQ=255)

                                                                                                              aaaCTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGaaa                            <  1:593050/141‑1 (MQ=255)

                                                                                                                   cATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAaaat                       >  2:130245/1‑141 (MQ=255)

                                                                                                                      gAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAaaataaa                    >  2:455231/1‑141 (MQ=255)

                                                                                                                           ttACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGc               <  1:731415/141‑1 (MQ=255)

                                                                                                                           ttACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAAAGAATTCGTGTACTACTATCGTTTTTTATTTTTATTTTTTTTTTCGCTTTTAAAACAACTGATATATAACACATAAACTATGATTAAAAAAATAAGTCCGc               >  2:1027947/1‑141 (MQ=255)

                                                                                                                             aCCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTa             >  1:924686/1‑141 (MQ=255)

                                                                                                                              ccAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTAt            >  2:41063/1‑141 (MQ=255)

                                                                                                                                 aCATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTa         <  1:551950/141‑1 (MQ=255)

                                                                                                                                 aCATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTa         <  1:559959/141‑1 (MQ=255)

                                                                                                                                        taataaAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACt  >  2:434469/1‑141 (MQ=255)

                                                                                                                                        taataaAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACt  >  2:916729/1‑141 (MQ=255)

                                                                                                                                        taataaAAACGATAGT‑GTACACG‑‑TCAATGAATTCGTGTACTACTATCGATTTTTATTTTTATCATTCTTAGTGCTGTAGAATTAACTAACTCACAACACATAAACTTTGAATAAAATAATAAGTCCGCTATCTAAATGACt  >  1:1009233/1‑141 (MQ=255)

ATTGAAGGTTTTATACATTGGATAAAAGATGAAAAAATTGATTGGCCTGGCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACT  >  CP000730/2693228‑2693504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.