BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2693368 =	85 (0.860)	6 (0.070)	5/234	NT	7.6%	intergenic (+39/+38)	USA300HOU_2547/USA300HOU_2548	TetR family transcriptional regulator/hypothetical protein
*	?	CP000730	2693417 =	69 (0.770)	6 (0.070)	5/234	NT	7.6%	coding (157/168 nt)	USA300HOU_2548	hypothetical protein

Only 100 of 107 total aligned reads displayed.

GCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTAAATGACCAAATTGCTAATACAATTCCCATTATTATTG  >  CP000730/2693277‑2693557

gCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGtttttt                                                                                                                                              <  1:1126384/141‑1 (MQ=255)

 cGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTttttta                                                                                                                                             >  1:195576/1‑141 (MQ=255)

   aaGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTtttttatt                                                                                                                                           <  1:516366/141‑1 (MQ=255)

    aGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTtttttattt                                                                                                                                          >  2:274574/1‑141 (MQ=255)

    aGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTtttttattt                                                                                                                                          <  1:116813/141‑1 (MQ=255)

              aaCATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCt                                                                                                                                >  2:750829/1‑141 (MQ=255)

                 aTTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTttttatttttattttttttat                                                                                                                             >  2:1110713/1‑132 (MQ=255)

                 aTTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTAt                                                                                                                             >  1:969119/1‑141 (MQ=255)

                 aTTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTAt                                                                                                                             >  2:841742/1‑141 (MQ=255)

                    ttCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGc                                                                                                                          <  2:509053/141‑1 (MQ=255)

                    ttCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGc                                                                                                                          >  2:562555/1‑141 (MQ=255)

                    ttCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGc                                                                                                                          <  1:56451/141‑1 (MQ=255)

                     tCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCt                                                                                                                         >  1:1044108/1‑141 (MQ=255)

                      ccATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTTTTTTTTTTTTGTTTATCGCTa                                                                                                                        >  2:238898/1‑141 (MQ=255)

                      ccATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTa                                                                                                                        >  1:835607/1‑141 (MQ=255)

                      ccATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTa                                                                                                                        <  1:71244/141‑1 (MQ=255)

                      ccATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTa                                                                                                                        >  1:521668/1‑141 (MQ=255)

                            aTTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTaaaa                                                                                                                  <  1:949991/141‑1 (MQ=255)

                            aTTAATCAATATTAAGATTAAATAGTAGATGAGAAACGCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTaaaa                                                                                                                  <  1:949977/141‑1 (MQ=255)

                             ttAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAaac                                                                                                                 <  1:97581/141‑1 (MQ=255)

                               aaTCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAaacaa                                                                                                               <  1:933889/141‑1 (MQ=255)

                               aaTCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAaacaa                                                                                                               <  1:53807/141‑1 (MQ=255)

                               aaTCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAaacaa                                                                                                               <  2:1002122/141‑1 (MQ=255)

                                 tCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATTGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACt                                                                                                             <  2:1034501/141‑1 (MQ=255)

                                    atatTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGAt                                                                                                          >  1:1057505/1‑141 (MQ=255)

                                     tcatagtttatgtgttgtgtatcagttgttttaatagcgttaagcacgataaaaataaaaaacgatagtgtacacgttaatgaattcgtgtactactatcgtttttTATTTTTATCGTGCTTATCGCTATTAAAACAACTg                                                                                                            <  1:398238‑M2/35‑1 (MQ=255)

                                        tAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATacac                                                                                                      <  2:1180601/141‑1 (MQ=255)

                                        tAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGCGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATacac                                                                                                      <  1:254094/141‑1 (MQ=255)

                                         aaGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTACTCGTGCCTATCGCTATTAAAACAACTGATacaca                                                                                                     <  2:653492/141‑1 (MQ=255)

                                          aGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATacacaa                                                                                                    >  2:456625/1‑141 (MQ=255)

                                           gATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATacacaac                                                                                                   <  1:508443/141‑1 (MQ=255)

                                             ttAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATacacaacac                                                                                                 >  1:687936/1‑141 (MQ=255)

                                              tAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATacacaacaca                                                                                                <  2:142650/141‑1 (MQ=255)

                                                aaTAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATa                                                                                              >  1:221561/1‑141 (MQ=255)

                                                aaTAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATa                                                                                              <  1:266448/141‑1 (MQ=255)

                                                aaTAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATa                                                                                              >  1:130609/1‑141 (MQ=255)

                                                  tagtagATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATaaa                                                                                            <  2:616456/141‑1 (MQ=255)

                                                   agtagATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAAc                                                                                           >  2:840924/1‑141 (MQ=255)

                                                    gtagATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACt                                                                                          >  2:458708/1‑141 (MQ=255)

                                                    gtagATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACt                                                                                          <  2:256268/141‑1 (MQ=255)

                                                     tagATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTa                                                                                         >  1:977962/1‑141 (MQ=255)

                                                       gATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTAta                                                                                       <  2:859556/141‑2 (MQ=255)

                                                       gATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAAATCATGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCACTATTAAAACAACTGATACACAACACATaaaaaaaa                                                                                       <  2:935608/141‑6 (MQ=255)

                                                        cagttgttttaatagcgataagcacgataaaaataAAAAACGATAGTAGTACACGAATTCATTAA‑‑CGTGTAC‑ACTATCGTTTTTTATTTTTATCGTGCTTAACGCTATTAAAACAACTGATACACAACACATAAACTATga                                                                                      <  1:398238‑M1/106‑1 (MQ=255)

                                                         tGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATgaa                                                                                     <  1:858086/141‑1 (MQ=255)

                                                             aaaCTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGaaa                                                                                 <  1:593050/141‑1 (MQ=255)

                                                             aaaCTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGaaa                                                                                 <  1:840978/141‑1 (MQ=255)

                                                                  cATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAaaat                                                                            >  2:130245/1‑141 (MQ=255)

                                                                     gAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAaaataaa                                                                         >  2:455231/1‑141 (MQ=255)

                                                                     gAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAaaataaa                                                                         >  1:1178612/1‑141 (MQ=255)

                                                                          ttACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGc                                                                    <  1:731415/141‑1 (MQ=255)

                                                                          ttACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAAAGAATTCGTGTACTACTATCGTTTTTTATTTTTATTTTTTTTTTCGCTTTTAAAACAACTGATATATAACACATAAACTATGATTAAAAAAATAAGTCCGc                                                                    >  2:1027947/1‑141 (MQ=255)

                                                                            aCCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTa                                                                  >  1:924686/1‑141 (MQ=255)

                                                                             ccAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTAt                                                                 >  2:41063/1‑141 (MQ=255)

                                                                             ccAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTAt                                                                 >  1:784225/1‑141 (MQ=255)

                                                                                aCATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTa                                                              <  1:559959/141‑1 (MQ=255)

                                                                                aCATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTa                                                              <  1:551950/141‑1 (MQ=255)

                                                                                       taataaAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACt                                                       >  2:916729/1‑141 (MQ=255)

                                                                                       taataaAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACt                                                       >  2:434469/1‑141 (MQ=255)

                                                                                       taataaAAACGATAGT‑GTACACG‑‑TCAATGAATTCGTGTACTACTATCGATTTTTATTTTTATCATTCTTAGTGCTGTAGAATTAACTAACTCACAACACATAAACTTTGAATAAAATAATAAGTCCGCTATCTAAATGACt                                                       >  1:1009233/1‑141 (MQ=255)

                                                                                             tggccaggGT‑GTACACG‑‑TTAATGAAGTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATTCACATGACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACt                                                 >  2:838332‑M1/9‑141 (MQ=255)

                                                                                             AAACGATAGT‑GTACACG‑‑TTAATGAATGCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGTCTTTGACt                                                 >  2:751176‑M1/1‑141 (MQ=255)

                                                                                              AACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTc                                                >  1:911998‑M1/1‑141 (MQ=255)

                                                                                              AACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTc                                                >  1:495330‑M1/1‑141 (MQ=255)

                                                                                                 GATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAgt                                             <  1:827915‑M1/141‑1 (MQ=255)

                                                                                                 GATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAgt                                             >  1:1180424‑M1/1‑141 (MQ=255)

                                                                                                    ttT‑GTACACT‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTAATAAAACAACTTACACACTACACATAAAATAAAAAAAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAgttgt                                          >  2:551552‑M1/3‑141 (MQ=255)

                                                                                                        gtagtacacgaattcattaacgtgtacactatcgtttttTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAgttgtt                                         >  2:150595‑M2/40‑141 (MQ=255)

                                                                                                        gtagtacacgaattcattaacgtgtacactatcgtttttTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAgttgtt                                         >  2:627446‑M2/40‑141 (MQ=255)

                                                                                                          acacG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAAATAAAAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTaaa                                     <  2:195576/141‑1 (MQ=255)

                                                                                                           gtacacgaattcattaacgtgtacactatcgtttttTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTaa                                      >  2:1163091‑M2/37‑141 (MQ=255)

                                                                                                           cacG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTTTTTTTTTTTTTCTTATCGCTATGAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTAAAt                                    >  2:96354/1‑141 (MQ=255)

                                                                                                           cacG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTAAAt                                    >  2:574541/1‑141 (MQ=255)

                                                                                                            acG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTAAATg                                   <  2:633231/141‑1 (MQ=255)

                                                                                                             cG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTAAATGa                                  <  1:121213/141‑1 (MQ=255)

                                                                                                               acgaattcattaacgtgtacactatcgtttttTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTAAATGa                                  <  1:627446‑M2/109‑1 (MQ=255)

                                                                                                                  tAATGAATTCTTGTACTACTATCGTTTTTTATTTTTATCGTGCTATTCTCTAGCAAAACAACTTATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTAAATGACCa                               <  1:772798/141‑1 (MQ=255)

                                                                                                                  tAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTAAATGACCa                               <  2:597603/141‑1 (MQ=255)

                                                                                                                  tAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTAAATGACCa                               <  2:93374/141‑1 (MQ=255)

                                                                                                                        aTTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTAAATGACCAAATTGc                         <  1:562555/141‑1 (MQ=255)

                                                                                                                         ttCGTGTACTACTATCGTTTTTTATTTTTATCGTTCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTAAATGACCAAATTGCt                        >  1:832080/1‑141 (MQ=255)

                                                                                                                            gtgtACTACTATCGTTTTTTTTTTTTTTTTTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTAAATGACCAAATTGCTAAt                     >  2:228389/1‑141 (MQ=255)

                                                                                                                             tgtACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTAAATGACCAAATTGCTAATa                    >  2:1106775/1‑141 (MQ=255)

                                                                                                                                actactATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTAAATGACCAAATTGCTAATACaa                 <  2:793367/141‑1 (MQ=255)

                                                                                                                                     tatcgtttttTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTAAATGACCAAATTGCTAATACAATTccc            >  2:319143‑M2/11‑141 (MQ=255)

                                                                                                                                      atcgtttttTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGTTATCTAAATGACTTTGACTCATTTGTTTAAATGACCAAATGGCTAATACAATTCCCa           <  2:708480‑M2/132‑1 (MQ=255)

                                                                                                                                      atcgtttttTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTAAATGACCAAATTGCTAATACAATTCCCa           >  1:1059385‑M2/10‑141 (MQ=255)

                                                                                                                                        cgtttttTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTAAATGACCAAATTGCTAATACAATTCCCatt         >  1:539767‑M2/8‑141 (MQ=255)

                                                                                                                                        cgtttttTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTAAATGACCAAATTGCTAATACAATTCACatt         >  2:1058709‑M2/8‑141 (MQ=255)

                                                                                                                                          tttttTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTAAATGACCAAATTGCTAATACAATTCCCattat       >  2:336676‑M2/6‑141 (MQ=255)

                                                                                                                                           ttttttttttttttttGCTTATCGCTATTAAAACAACTGTTACACAACACATAAACTATGAAGAAAAAAATATATCCGCTATCTAAATGACTTTTTCTTTTTTTTTTAAATGACCAAATTTCTAATACAATTCCCattatt      >  2:115911/1‑141 (MQ=255)

                                                                                                                                             ttTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTAAATGACCAAATTGCTAATACAATTCCCattattat    <  2:292098‑M2/139‑1 (MQ=255)

                                                                                                                                             ttTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTAAATGACCAAATTGCTAATACAATTCCCattattat    <  1:843174‑M2/139‑1 (MQ=255)

                                                                                                                                             ttTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTAAATGACCAAATTGCTAATACAATTCCCattattat    <  2:687936‑M2/139‑1 (MQ=255)

                                                                                                                                             ttTATTTTTATCATGCTTATCGCTATTCAAACAACTAATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTAAATGACCAAATTGCTAATACAATTCCCattattat    <  1:531887‑M2/139‑1 (MQ=255)

                                                                                                                                              tTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTAAATGACCAAATTGCTAATACAATTCCCattattatt   >  2:732704‑M2/2‑141 (MQ=255)

                                                                                                                                              tTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTAAATGACCAAATTGCTAATACAATTCCCattattatt   >  1:686796‑M2/2‑141 (MQ=255)

                                                                                                                                              tTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTAAATGACCAAATTGCTAATACAATTCCCattattatt   >  1:508782‑M2/2‑141 (MQ=255)

                                                                                                                                               tatttttatCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTAAATGCCCAAATTGCTAATACAATTCCCATTATTATTg  <  2:1014016/141‑1 (MQ=255)

                                                                                                                                               tatttttatCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTAAATGACCAAATTGCTAATACAATTCCCATTATTATTg  >  1:1082960/1‑141 (MQ=255)

GCGAAGATATTGATAACATTTTCCATAGATTAATCAATATTAAGATTAAATAGTAGATGAGAAACTCATGAGCGTTACCAACATTCATAATAAAAACGATAGT‑GTACACG‑‑TTAATGAATTCGTGTACTACTATCGTTTTTTATTTTTATCGTGCTTATCGCTATTAAAACAACTGATACACAACACATAAACTATGAAGAAAAAAATAAATCCGCTATCTAAATGACTTTGACTCAGTTGTTTAAATGACCAAATTGCTAATACAATTCCCATTATTATTG  >  CP000730/2693277‑2693557

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.