New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 52495 =94 (0.950)143 (1.450)
+T		 5/256 NT 58.0% intergenic (+105/‑568) USA300HOU_0043/USA300HOU_0044 hypothetical membrane protein/possible transcriptional regulator
?CP000730 = 52988 115 (1.160)intergenic (+598/‑75) USA300HOU_0043/USA300HOU_0044 hypothetical membrane protein/possible transcriptional regulator

Only 100 of 283 total aligned reads displayed.

TGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGG  >  CP000730/52849‑53128
                                                                                                                                           |                                                                                                                                            
tGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATAAGAGGGATGGTTTGAGAAAATAGATGTAAACACGCGAAAATcg                                                                                                                                             >  2:102692/1‑141 (MQ=11)
            agtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATAAGAGGGATCGTTTGAAATAATAGAAGTATTCGCGTGAAAATCGCGTGAAgtagta                                                                                                                                 >  2:27241/1‑141 (MQ=11)
               aattgagtaaaaatcacgtgaaATAATGAGAGCTATCGCGTGAAAAAATAGTAGTAATGGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcaga                                                                                                                              >  2:514462‑M2/10‑125 (MQ=255)
                aTCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGt                                                                                                                             <  1:1001777/141‑1 (MQ=38)
                aTCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGt                                                                                                                             <  1:788801/141‑1 (MQ=38)
                   gcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGa                                                                                                                          >  1:1030118/1‑141 (MQ=40)
                       gAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGt                                                                                                                      <  1:725729/141‑1 (MQ=255)
                       gAAAACCGCGTGAAATACCCAGACGTATCTGTTCAAAGCATCGTATCAATCTCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGt                                                                                                                      <  1:940851/141‑1 (MQ=14)
                        aaaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGtt                                                                                                                     <  1:98307/141‑1 (MQ=255)
                             cgcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAGTATGGTAGACGGTTTGAGt                                                                                                                >  1:868990/1‑141 (MQ=255)
                               ggTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTaa                                                                                                              <  1:1078139/140‑1 (MQ=255)
                               cgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTGATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTaa                                                                                                              <  1:881906/141‑1 (MQ=255)
                                         tCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATTGTTTGAAATCATCGTAGGAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAGATTAATGGAg                                                                                                    >  1:118331/1‑141 (MQ=255)
                                         tCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAg                                                                                                    >  1:1127502/1‑141 (MQ=255)
                                               taaTCGTGTGAAATCATCGGAGCAATCGCGTGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTAtttt                                                                                              <  1:997493/140‑1 (MQ=255)
                                               gAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTAtttt                                                                                              <  1:807132/141‑1 (MQ=255)
                                                      ttGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgggaaataatcagaggaatcgtttgacatcatcgtagtactgctgcgaaaaaa                                                                                       <  1:950835‑M2/141‑56 (MQ=255)
                                                        gAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTAt                                                                                     >  1:446314/1‑141 (MQ=255)
                                                        gAAATCATCGTAGTAATCGCACGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGATTTGAGTAAATTAATGGAGTATTTTAATATTTAt                                                                                     >  1:1105405/1‑141 (MQ=255)
                                                               tcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGCGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTgg                                                                              <  1:651391/141‑1 (MQ=255)
                                                                  tagtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTggagg                                                                           <  1:666230/141‑1 (MQ=255)
                                                                  gagtaATCGCGCGAAAAGCGCGGGAAATAATCAGAGGGATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTGTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTggagg                                                                           <  1:105517/140‑1 (MQ=255)
                                                                       atgtgttaaaaatcgcgcgaAATAATCAGATGAATCGTTTGAAGTCATCGGAGTAATCGCGCGAAAATCccgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagag                                                                      >  2:609323‑M2/9‑69 (MQ=255)
                                                                             cgAAAATCGCGTGAAGTAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGc                                                                <  1:988374/141‑1 (MQ=255)
                                                                                aaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATa                                                             <  2:1105405/141‑1 (MQ=255)
                                                                                aaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATa                                                             >  1:899544/1‑141 (MQ=255)
                                                                                   tagaataaaataatcagATAAATAGTTTGAATAAATAGTAAAAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaa                                                          >  2:751385‑M2/8‑57 (MQ=255)
                                                                                   taaagtgagATAATCAAGGGAAACGTTTGAAGAAATAGTAGAAATCGAGTGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaa                                                          >  2:736528‑M2/5‑57 (MQ=255)
                                                                                   tCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCCCGCGAAAAGCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaa                                                          >  1:235082‑M2/1‑57 (MQ=255)
                                                                                   aaaagtgaaATAATCAGAGAAAACGTTTAAAAAAATAGTAGAAATCGAGTGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcggagtaatcgcgcgacaatcacgtgaaataatcagaggaatcgtttgaa                                                          >  2:654302‑M2/5‑57 (MQ=255)
                                                                                       gTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataataagagggatcgtttgaaaaca                                                      <  2:593275‑M2/141‑89 (MQ=255)
                                                                                       gTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtaataatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatca                                                      <  2:780733‑M2/141‑89 (MQ=255)
                                                                                         gAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgc                                                                                              >  2:492733‑M2/1‑51 (MQ=255)
                                                                                           aataatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagagg                                                                                                                            <  2:85493‑M2/67‑19 (MQ=255)
                                                                                            ataatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcat                                                                                                            <  1:432240‑M2/82‑35 (MQ=255)
                                                                                            ataatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagagg                                                                                                                            >  2:163854‑M2/1‑48 (MQ=255)
                                                                                              aatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAatat                                               >  1:1143143/1‑141 (MQ=255)
                                                                                               atCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagta                                              >  1:186358‑M2/1‑45 (MQ=255)
                                                                                               atCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgc                                                                                                >  1:864553‑M2/1‑45 (MQ=255)
                                                                                               atCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAatata                                              >  1:775326/1‑141 (MQ=255)
                                                                                                tCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaa                                             >  1:1151348‑M2/1‑44 (MQ=255)
                                                                                                tCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAAACacgggaaataatcagaggagtcgtttgaaatcatcgtagtaatcgcgcgacaatcacgtgaaaaaagaagaggaatcgtttgaaatcatcgtagcaa                                             <  2:917314‑M2/141‑98 (MQ=255)
                                                                                                  agagGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatctcgtgaaataatcagaggaatcgtttgaa                                                          >  2:388170‑M2/1‑42 (MQ=255)
                                                                                                  agagGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatc                                           <  1:439179‑M2/141‑100 (MQ=255)
                                                                                                  agagGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagag                                                                                                                             <  2:1048850‑M2/59‑18 (MQ=255)
                                                                                                  agacGAAACGTTTGAAATCACCGTAGAAATCTTGAGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatc                                           >  2:206141‑M2/1‑42 (MQ=255)
                                                                                                   gagGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacg                                                                                                                                           <  1:116989‑M2/44‑4 (MQ=255)
                                                                                                    agGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgc                                         >  2:238443‑M2/1‑40 (MQ=255)
                                                                                                    agGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATagag                                         >  1:687980/1‑141 (MQ=255)
                                                                                                     ggAATCGTTTGAAATCATCGTAGTAATCGGGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcg                                        >  1:601087‑M2/1‑39 (MQ=255)
                                                                                                     ggAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcg                                        <  1:1123048‑M2/141‑103 (MQ=255)
                                                                                                     ggAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGt                                        <  1:590207/141‑1 (MQ=255)
                                                                                                     ggAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGt                                        <  1:858995/141‑1 (MQ=255)
                                                                                                       aaTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGGGCAACAGAAAATCATAGATAAAGTAAATATATAGAGtat                                      <  2:950462/141‑1 (MQ=25)
                                                                                                        aatgtttGAAAACATAGTAAAAATCGAGTGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcga                                     >  2:642925‑M2/4‑36 (MQ=255)
                                                                                                        aTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcga                                     >  1:915573‑M2/1‑36 (MQ=255)
                                                                                                        aTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagag                                                                      <  2:865650‑M2/108‑73 (MQ=255)
                                                                                                        aTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtt                                                                                                                     <  1:408998‑M2/61‑26 (MQ=255)
                                                                                                        aTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGtata                                     <  1:262325/141‑1 (MQ=255)
                                                                                                         tCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgttt                                                                                                                    <  1:989528‑M2/61‑27 (MQ=255)
                                                                                                         tCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgttt                                                                                                                    <  1:637893‑M2/61‑27 (MQ=255)
                                                                                                         tCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATaa                                    >  1:259464/1‑141 (MQ=255)
                                                                                                         tCGGTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACAATGGTAGACGGTTTGAGTAAAATAATGGAGTATTTTAATATATATGGTTTGGAGGAATTGCGTTGGATAGTGGAAGTAGATATATAGATTATaa                                    >  2:554044/1‑141 (MQ=37)
                                                                                                          cGTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtga                                                                                                                                        <  1:87454‑M2/40‑7 (MQ=255)
                                                                                                           gTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaa                                                          >  2:545196‑M2/1‑33 (MQ=255)
                                                                                                           gTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaa                                                                                                                <  2:427068‑M2/63‑31 (MQ=255)
                                                                                                           gTTTGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaa                                                                                                                                       <  2:753188‑M2/40‑8 (MQ=255)
                                                                                                           gTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGa                                  >  2:31608/1‑141 (MQ=255)
                                                                                                            tttGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggcatcgtttgaaatcatcgtagtagtcgcgcgaaaatcacgtggaataataagaggaatcgtttgaaatccacgtagtaatcgagcgaaaat                                 <  1:608730‑M2/141‑110 (MQ=255)
                                                                                                            tttGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgc                                                                                              <  1:344372‑M2/80‑49 (MQ=255)
                                                                                                             ttGAAATCATCGTAGTAATCGCGCGAAAATCacgtgaa                                                                                                                                       <  1:783267‑M2/38‑8 (MQ=255)
                                                                                                               gAAATCATCGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaa                                                                                         >  1:481057‑M2/1‑29 (MQ=255)
                                                                                                               gAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGGTTGAGTAAATTAATGGAGTATTTTAATAGTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATc                              >  2:822032/1‑141 (MQ=255)
                                                                                                                  atcatcGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtg                           >  1:55456‑M2/1‑26 (MQ=255)
                                                                                                                    tatcgTAGTAATCACGCGAAAATCacgtaaaaaaatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaa                         >  1:121658‑M2/2‑24 (MQ=255)
                                                                                                                    catcGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttg                                                                                                                   >  2:605742‑M2/1‑24 (MQ=255)
                                                                                                                    catcGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttg                                                                                                                   <  1:605742‑M2/51‑28 (MQ=255)
                                                                                                                      tcGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaa                                                                               >  1:575268‑M2/1‑22 (MQ=255)
                                                                                                                      tcGTAGTAATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaa                                                                               <  2:575268‑M2/85‑64 (MQ=255)
                                                                                                                         tagtaATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtag                                                                                                       <  2:1146494‑M2/58‑40 (MQ=255)
                                                                                                                          agtaATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcga                                                                                            <  2:874168‑M2/68‑51 (MQ=255)
                                                                                                                           gtaATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataataa                  <  2:988374‑M2/141‑125 (MQ=255)
                                                                                                                           gtaATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatc                                                                                                           <  1:833741‑M2/52‑36 (MQ=255)
                                                                                                                           gtaATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGAtt                  >  2:147841/1‑141 (MQ=255)
                                                                                                                            taATCGCGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcga                                     <  1:492819‑M2/121‑106 (MQ=255)
                                                                                                                             aaTCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCCCGAAAAGGATTAt                >  1:413604/1‑141 (MQ=255)
                                                                                                                              attgagcgaaaatCacgtaaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagag               >  2:45542‑M2/6‑14 (MQ=255)
                                                                                                                              aTCACGCGAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagag               >  1:654293‑M2/1‑14 (MQ=255)
                                                                                                                               ttgtgtgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtaataatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagagg              >  2:523303‑M2/7‑13 (MQ=255)
                                                                                                                               tCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTgg                                                                              <  2:798752/77‑1 (MQ=255)
                                                                                                                                 gcgcgAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaa            >  1:426315‑M2/1‑11 (MQ=255)
                                                                                                                                 gcgcgAAAATCacgtgaaataatcagaggaatcgtt                                                                                                                     <  1:1189488‑M2/36‑26 (MQ=255)
                                                                                                                                 gcgcgAAAATCGCGTGAGATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTaa            <  2:702443/141‑1 (MQ=255)
                                                                                                                                  cgcgAAAATCacgtgaaataatcagaggaatcgtttgaa                                                                                                                 <  1:158489‑M2/39‑30 (MQ=255)
                                                                                                                                    cgAAAATCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaa                                                                                         <  2:861682‑M2/61‑54 (MQ=255)
                                                                                                                                      aaaaTCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGata       >  2:344306/1‑141 (MQ=255)
                                                                                                                                       aaaTCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgggcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgttt      >  1:297273‑M2/1‑5 (MQ=255)
                                                                                                                                       aaaTCacgtgaaagaagcagagggtttgtttcaattcatcgtagtattcgcgaganaatcagntgaaaggatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcncgtgaaataatcagaggaatcgttt      >  1:376969‑M2/1‑5 (MQ=255)
                                                                                                                                       aaaTCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGatat      >  1:1181480/1‑141 (MQ=255)
                                                                                                                                        aaTCacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcacgtgaaataatcattactgcacctgg     <  1:484448‑M2/141‑138 (MQ=255)
                                                                                                                                           |                                                                                                                                            
TGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGG  >  CP000730/52849‑53128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.