New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	904166 =	39 (0.940)	3 (0.080)	3/230	NT	7.8%	intergenic (+441/‑230)	USA300HOU_0861/USA300HOU_0862	possible DNA primase/hypothetical protein
	?	CP000730	904273 =	36 (0.970)					intergenic (+548/‑123)	USA300HOU_0861/USA300HOU_0862	possible DNA primase/hypothetical protein

ATAACCACTGTAAACACAGTGATGTCAATACATACAGGCTGTTGGTTACTGAGTTACTGAAAATTCACGGTATTTTATATAATCTTTTATTACCTTAATTCTCTATTATACATTTCTACTAAAAAGAAATAATTTATAGTAACTCAGTAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/904316‑904166 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtaactcagtaacCAACAGCCTGTATGTATTGACATCACTGTGTTTACAGTGGTTATTGAAAAACATAAATTCAGTGGTTTTTAGTATCTAACGTGGTTGCTTTAGTAACTGGATAGATTGGAGGACTAGAGTAACATGAATAGAAATAGAAT  >  CP000730/904273‑904412                                                                                                                                                                                                                                                                                                     ATAACCACTGTAAACACAGTGATGTCAATACATACAGGCTGTTGGTTACTGAGTTACTGAAAATTCACGGTATTTTATATAATCTTTTATTACCTTAATTCTCTATTATACATTTCTACTAAAAAGAAATAATTTATAGTA                                                                                                                                                        >  1:483450/1‑141  TAACCACTGTAAACACAGTGATGTCAATACATACAGGCTGTTGGTTACTGAGTTACTGAAAATTCACGGTATTTTATATAATCTTTTATTACCTTAATTCTCTATTATACATTTCTACTAAAAAGAAATAATTTATAGTAA                                                                                                                                                       >  2:278941/1‑141   AACCACTGTAAACACAGTGATGTCAATACATACAGGCTGTTGGTTACTGAGTTACTGAAAATTCACGGTATTTTATATAATCTTTTATTACCTTAATTCTCTATTATACATTTCTACTAAAAAGAAATAATTTATAGTAAC                                                                                                                                                      >  2:335283/1‑141      CACTGTAAACACAGTGATGTCAATACATACAGGCTGTTGGTTACTGAGTTACTGAAAATTCACGGTATTTTATATAATCTTTTATTACCTTAATTCTCTATTATACATTTCTACTAAAAAGAAATAATTTATAGTAACTCA                                                                                                                                                   >  1:14587/1‑141       ACTGTAAACACAGGGATGTTAATACGTACAGGCTGTTGGTTACTGAGTTACTGAAAATTAACGGTATTTTATATAATCTTTTATTACCTTAATTCTCTATTATACATTTCTACTAAGAAGAAATAATTTATAGTAGCTCAG                                                                                                                                                  <  2:277197/141‑1         TGTAAACACAGTGATGTCAATACATACAGGCTGTTGGTTACTGAGTTACTGAAAATTCACGGTATTTTATATAATCTTTTATTACCTTAATTCTCTATTATACATTTCTACTAAAAAGAAATAATTTATAGTAACTCAGTA                                                                                                                                                >  2:222635/1‑141         TGTAAACACAGTGATGTCAATACATACAGGCTGTTGGTTACTGAGTTACTGAAAATTCACGGTATTTTATATAATCTTTTATTACCTTAATTCTCTATTATACATTTCTACTAAAAAGAAATAATTTATAGTAACTCAGTA                                                                                                                                                <  1:399700/141‑1                                                  TGAGTTACTGAAAATTCACGGTATTTTATATAATCTTTTATTACCTTAATTCTCTATTATACATTTCTACTAAAAAGAAATAATTTATAGTAACTCAGTAACCAACAGCCTGTATGTATTGACATCACTGTGTTTACAGTG                                                                                                       >  1:210101/1‑141                                                   GAGTTACTGAAAATTCACGGTATTTTATATAATCTTTTATTACCTTAATTCTCTATTATACATTTCTACTAAAAAGAAATAATTTATAGTAACTCAGTAACCAACAGCCTGTATGTATTGACATCACTGTGTTTACAGTGG                                                                                                      >  2:197701/1‑141                                                      TTACTGAAAATTCACGGTATTTTATATAATCTTTTATTACCTTAATTCTCTATTATACATTTCTACTAAAAAGAAATAATTTATAGTAACTCAGTAACCAACAGCCTGTATGTATTGACATCACTGTGTTTACAGTGGTTA                                                                                                   >  1:305947/1‑141                                                                                                                                               CTCAGTAACCAACAGCCTGTATGTATTGACATCACTGTGTTTACAGTGGTTATTGAAAAACATAAATTCAGTGGTTTTTAGTATCTAACGTGGTTGCTTTAGTAACTGGATAGATTGGAGGGCTAGAGTAACATGAATAGA          <  1:263778/141‑1                                                                                                                                                  AGTAACCAACAGCCTGTATGTATTGACATCACTGTGTTTACAGTGGTTATTGAAAAACATAAATTCAGTGGTTTTTAGTATCTAACGTGGTTGCTTTAGTAACTGGATAGATTGGAGGACTAGAGTAACATGAATAGAAAT       <  2:356288/141‑1                                                                                                                                                    TAACCAACAGCCTGTATGTATTGACATCACTGTGTTTACAGTGGTTATTGAAAAACATAAATTCAGTGGTTTTTAGTATCTAACGTGGTTGCTTTAGTAACTGGATAGATTGGAGGACTAGAGTAACATGAATAGAAATAG     >  1:285814/1‑141                                                                                                                                                       CCAACAGCCTGTATGTATTGACATCACTGTGTTTACAGTGGTTATTGAAAAACATAAATTCAGTGGTTTTTAGTATCTAACGTGGTTGCTTTAGTAACTGGATAGATTGGAGGACTAGAGTAACATGAATAGAAATAGAAT  >  2:257003/1‑141                                                                                                                                                       CCAACAGCCTGTATGTATTGACATCACTGTGTTTACAGTGGTTATTGAAAAACATAAATTCAGTGGTTTTTAGTATCTAACGTGGTTGCTTTAGTAACTGGATAGATTGGAGGACTAGAGTAACATGAATAGAAATAGAAT  <  2:142271/141‑1                                                                                                                                                                                                                                                                                                     ATAACCACTGTAAACACAGTGATGTCAATACATACAGGCTGTTGGTTACTGAGTTACTGAAAATTCACGGTATTTTATATAATCTTTTATTACCTTAATTCTCTATTATACATTTCTACTAAAAAGAAATAATTTATAGTAACTCAGTAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/904316‑904166 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtaactcagtaacCAACAGCCTGTATGTATTGACATCACTGTGTTTACAGTGGTTATTGAAAAACATAAATTCAGTGGTTTTTAGTATCTAACGTGGTTGCTTTAGTAACTGGATAGATTGGAGGACTAGAGTAACATGAATAGAAATAGAAT  >  CP000730/904273‑904412

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.