| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 904166 = | 39 (0.940) | 3 (0.080) | 3/230 | NT | 7.8% | intergenic (+441/‑230) | USA300HOU_0861/USA300HOU_0862 | possible DNA primase/hypothetical protein |
| ? | CP000730 | 904273 = | 36 (0.970) | intergenic (+548/‑123) | USA300HOU_0861/USA300HOU_0862 | possible DNA primase/hypothetical protein | |||||
AATCGGAAGAGACTTGCAGTTATACAAAATTGCCTAAGATACTAAAGTTACTAAAAAACGTTTAAGTCACTAAAAGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGAAATGTATAATAGAGAATTAAGGTAATAAAAGATTATATAAAATACCGTGAATTTTCAGTAACTCAGTAACCAACAGCCTGTATGTATTGACATCACTGT > CP000730/904026‑904301 | attctatttctattcatgttactctagtcctccaatctatccagttactaaagcaaccacgttagatactaaaaaccactgaatttatgtttttcaataaccactgtaaacacagtgatgtcaatacatacaggctgttgg < 2:142271‑M1/1‑1 (MQ=255)attctatttctattcatgttactctagtcctccaatctatccagttactaaagcaaccacgttagatactaaaaaccactgaatttatgtttttcaataaccactgtaaacacagtgatgtcaatacatacaggctgttgg > 2:257003‑M1/141‑141 (MQ=255) tCGGAAGAGACTTGCAGTTATACAAAATTGCCTAAGATACTAAAGTTACTAAAAAACGTTTAAGTCACTAAAAGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGtt > 2:14587/1‑141 (MQ=255) ctatttctattcatgttactctagtcctccaatctatccagttactaaagcaaccacgttagatactaaaaaccactgaatttatgtttttcaataaccactgtaaacacagtgatgtcaatacatacaggctgttgGTTa > 1:285814‑M1/138‑141 (MQ=255) ggAAGAGACTTGCAGTTATACAAAATTGCCTAAGATACTAAAGTGACTAAAAAACGTTTAAGTCACTAAAAGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTAc < 1:359296/141‑1 (MQ=255) gAAGAGACTTGCAGTTATACAAAATTGCCTAAGATACTAAAGTTACTAAAAAACGTTTAAGTCACTAAAAGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTACt > 2:199395/1‑141 (MQ=255) atttctattcatgttactctagtcctccaatctatccagttactaaagcaaccacgttagatactaaaaaccactgaatttatgtttttcaataaccactgtaaacacagtgatgtcaatacatacaggctgttgGTTACt < 2:356288‑M1/6‑1 (MQ=255) tctattcatgttactctagccctccaatctatccagttactaaagcaaccacgttagatactaaaaaccactgaatttatgtttttcaataaccactgtaaacacagtgatgtcaatacatacaggctgttgGTTACTGAg < 1:263778‑M1/9‑1 (MQ=255) ttGCAGTTATACAAAATTGCCTAAGATACTAAAGTTACTAAAAAACGTTTAAGTCACTAAAAGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACt < 1:454051/141‑1 (MQ=255) ttGCAGTTATACAAAATTGCCTAAGATACTAAAGTTACTAAAAAACGTTTAAGTCACTAAAAGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACt > 1:217969/1‑141 (MQ=255) aGTTATACAAAATTGCCTAAGATACTAAAGTTACTAAAAAACGTTTAAGTCACTAAAAGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACTATaa > 1:278941/1‑141 (MQ=255) ttATACAAAATTGCCTAAGATACTAAAGTTACTAAAAAACGTTTAAGTCACTAAAAGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAGAAATAAAAACAAAAAGTTACTGAGTTACTATAAat < 2:225552/141‑1 (MQ=255) ataCAAAATTGCCTAAGATACTAAAGTTACTAAAAAACGTTTAAGTCACTAAAAGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACTATAAatta < 1:465400/141‑1 (MQ=255) taCAAAATTGCCTAAGATACTAAAGTTACTAAAAAACGTTTAAGTCACTAAAAGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACTATAAattat > 1:142271/1‑141 (MQ=255) aaCAAAATGGCATAAGATACTAAAGTTACTAAAAAACGTTTAAGTCACTAAAAGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAAAAAAAAAAAAAAAAAGTTACTGAGTTACTATAAattat < 2:222770/140‑1 (MQ=255) tAAGATACTAAAGTTACTAAAAAACGTTTAAGTCACTAAAAGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTTCTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACTATAAATTATTTCTTTTtagta > 2:263778/1‑141 (MQ=255) tAAGATACTAAAGTTACTAAAAAACGTTTAAGTCACTAAAAGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACTATAAATTATTTCTTTTtagta > 2:493064/1‑141 (MQ=255) aTACTAAAGTTACTAAAAAACGTTTAAGTCACTAAAAGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGaaa < 1:991/141‑1 (MQ=255) tACTAAAGTTACTAAAAAACGTTTAAGTCACTAAAAGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGAAAt < 2:278794/141‑1 (MQ=255) tAAAGTTACTAAAAAACGTTTAAGTCACTAAAAGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGAAATGta > 1:448672/1‑141 (MQ=255) aaaGTTACTAAAAAACGTTTAAGTCACTAAAAGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAACAAGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGAAATGtat < 1:412637/141‑1 (MQ=255) aaaGTTACTAAAAAACGTTTAAGTCACTAAAAGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGAAATGtat > 1:21365/1‑141 (MQ=255) aaGTTACTAAAAAACGTTTAAGTCACTAAAAGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGAAATGtata > 2:319838/1‑141 (MQ=255) tACTAAAAAACGTTTAAGTCACTAAAAGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGAAATGTATAATag < 2:288909/141‑1 (MQ=255) tACTAAAAAACGTTTAAGTCACTAAAAGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGAAATGTATAATag < 1:274254/141‑1 (MQ=255) aCTAAAAAACGTTTAAGTCACTAAAAGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGAAATGTATAATaga > 1:409167/1‑141 (MQ=255) aaaaCGTTTAAGTCACTAAAAGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGAAATGTATAATAGAGAAtt < 1:200645/141‑1 (MQ=255) tccaGTCACTAAAAGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGAAATGTATAATAGAGAATGAAGGtaa > 2:12122/4‑141 (MQ=255) tAAGTCACTAAAAGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGAAATGTATAATAGAGAATTAAGGtaat < 1:455039/141‑1 (MQ=255) gTCACTAAAAGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGAAAAAAAGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGAAATGTATAATAGAGAATTAAGGTAATaaa < 2:290371/141‑1 (MQ=255) aCTAAAAGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACTATAACTTATTTCTTTTTAGTAGAAATGTATAATAGAGAATTAAGGTAATAAAAGa > 2:431188/1‑141 (MQ=255) aCTAAAAGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGAAATGTATAATAGAGAATTAAGGTAATAAAAGa < 2:382829/141‑1 (MQ=255) aaaGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGAAATGTATAATAGAGAATTAAGGTAATAAAAGATtat > 2:91015/1‑141 (MQ=255) aGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGAAATGTATAATAGAGAATTAAGGTAATAAAAGATtatat > 2:46041/1‑141 (MQ=255) aTTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGAAATGTATAATAGAGAATTAAGGTAATAAAAGATTATATAAAATACCGt < 2:74946/141‑1 (MQ=255) aGAATTCAGTAACCACAGTTTTTTTTTTTATATTAGTCTTTTTGACAAAAAGTTACTGATTTACTATAAATTATTTTTTTTTAGTAGAAATGTATAATATATAAATAAAGTAATAAAAGATTATATAatattcattttatt > 2:387656/1‑131 (MQ=255) aGAATTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGAAATGTATAATAGAGAATTAAGGTAATAAAAGATTATATAAAATACCGTGAAtt > 2:296305/1‑141 (MQ=255) aTTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGAAATGTATAATAGAGAATTAAGGTAATAAAAGATTATATAAAATACCGTGAATTTtc < 1:170514/141‑1 (MQ=255) taaccactgtaaacacagtgatgtcaatacatacaggctgttgGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGAAATGTATAATAGAGAATTAAGGTAATAAAAGATTATATAAAATACCGTGAATTTtcagtaa > 1:305947‑M1/44‑141 (MQ=255) gTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACTATAAATTATTTCTTTTTATTAGTAATGTATAATAGAGAATTAAGGTAATAAAAGATTATATAAAATACCGTGAATTTtcagtaa > 2:84945/1‑141 (MQ=255) ccactgtaaacacagtgatgtcaatacatacaggctgttgGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGAAATGTATAATAGAGAATTAAGGTAATAAAAGATTATATAAAATACCGTGAATTTtcagtaactc > 2:197701‑M1/41‑141 (MQ=255) cactgtaaacacagtgatgtcaatacatacaggctgttgGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGAAATGTATAATAGAGAATTAAGGTAATAAAAGATTATATAAAATACCGTGAATTTtcagtaactca > 1:210101‑M1/40‑141 (MQ=255) aGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGAAATGTATAATAGAGAATTAAGGTAATAAAAGATTATATAAAATACCGTGAATTTtcagtaactcagtaa > 1:482671/1‑141 (MQ=255) gTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGAAATGTATAATAGAGAATTAAGGTAATAAAAGATTATATAAAATACCGTGAATTTtcagtaactcagtaac > 1:86970/1‑141 (MQ=255) cTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACTATAAATTATTTCATTTTATTTAAAATGTATAATTTAGAATTAAGGTCATAAAAGTTTATATAAAATATCGTCAATTTTCAGTAACACAGTAAGTAACaac > 2:490841/1‑139 (MQ=255) tAGTCTTTTTGACAAAAAGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGAAATGTATAATAGAGAATTAAGGTAATAAAAGATTATATAAAATACCGTGAATTTTCAGTAACTCAGTAACCAACAGCCtgtatgta < 1:123382/141‑1 (MQ=255) gTCTTTTTGACAAAAAGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGAAATGTATAATAGAGAATTAAGGTAATAAAAGATTATATAAAATACCGTGAATTTTCAGTAACTCAGTAACCAACAGCCTGTATGTAtt < 1:320328/141‑1 (MQ=255) cTTTTTGACAAAAAGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGAAATGTATAATAGAGAATTAAGGTAATAAAAGATTATATAAAATACCGTGAATTTTCAGTAACTCAGTAACCAACAGCCTGTATGTATTGa < 1:314698/141‑1 (MQ=255) tttttGACAAAAAGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGAAATGTATAATAGAGAATTAAGGTAATAAAAGATTATATAAAATACCGTGAATTTTCAGTAACTCAGTAACCAACAGCCTGTATGTATTGAc > 1:50023/1‑141 (MQ=255) aaaaaGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGAAATGTATAATAGAGAATTAAGGTAATAAAAGATTATATAAAATACCGTGAATTTTCAGTAACTCAGTAACCAACAGCCTGTATGTATTGACATCACtgt < 1:270078/141‑1 (MQ=255) | AATCGGAAGAGACTTGCAGTTATACAAAATTGCCTAAGATACTAAAGTTACTAAAAAACGTTTAAGTCACTAAAAGATACTAAAATTCTAGAATTCAGTAACCACAGTTTTTACTTTCATATTAGTCTTTTTGACAAAAAGTTACTGAGTTACTATAAATTATTTCTTTTTAGTAGAAATGTATAATAGAGAATTAAGGTAATAAAAGATTATATAAAATACCGTGAATTTTCAGTAACTCAGTAACCAACAGCCTGTATGTATTGACATCACTGT > CP000730/904026‑904301 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |