New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP000730 | 2249230 = | 46 (1.100) | 3 (0.080) | 3/244 | NT | 6.6% | intergenic (‑223/+176) | USA300HOU_2120/USA300HOU_2121 | hypothetical protein/hypothetical protein |
? | CP000730 | 2249273 = | 41 (1.040) | intergenic (‑266/+133) | USA300HOU_2120/USA300HOU_2121 | hypothetical protein/hypothetical protein |
TGTTGCCAGTAGTTGACTGAATATGCGTTTGTAACAAGCTTTTTTCGATTCTAGTCAACAGTAATTAAATTTATGATATGGCAATACTTTGTAATACTAATATTAAATGGCGACTTTTATTTCACTA‑TGTTATAAGAGTTGCCATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2249376‑2249230 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccatttAATATTAGTATTACAAAGTATTGCCATATCATAAATTTAATTACTGTTGACTAGAATCGAAAAAAGCTTGTTACAAACGCATATTCAGTCAACTACTG > CP000730/2249273‑2249370 TGTTGCCAGTAGTTGACTGAATATGCGTTTGTAACAAGCTTTTTTCGATTCTAGTCAACAGTAATTAAATTTATGATATGGCAATACTTTGTAATACTAATATTAAATGGCGACTTTTATTTCACTA‑TGTTATAAGAGTTG < 1:305286/141‑1 GTTGCCAGTAGTTGACTGAATATGCGTTTGTAACAAGCTTTTTTCGATTCTAGTCAACAGTAATTAAATTTATGATATGGCAATACTTTGTAATACTAATATTAAATGGCGACTTTTATTTCACTA‑TGTTATAAGAGTTGC < 2:351483/141‑1 GACTGAATATGCGTTTGTAACAAGCTTTTTTCGATTCTAGTCAACAGTAATTAAATTTATGATATGGCAATACTTTGTAATACTAATATTAAATGGCAACTCTTATAACA‑TAGTGAAATAAAAGTCGCCATTTAATATTAG < 1:251123/141‑1 TTAAATGGCGACTTTTATTTCACTA‑TGTTATAAGAGTTGCCATTTAATATTAGTATTACAAAGTATTGCCATATCATAAATTTAATTACTGTTGACTAGAATCGAAAAAAGCTTGTTACAAACGCATATTCAGTCAACTAC > 1:349959/1‑141 AAATGGCGACTTTTATTTCACTA‑TGTTATAAGAGTTGCCATTTAATATTAGTATTACAAAGTATTGCCATATCATAAATTCAATTACTGTTGACTAGAATCGAAAAAAGCTTGTTACAAACGCATATTCAGTCAACTACTG > 2:351119/1‑141 TGTTGCCAGTAGTTGACTGAATATGCGTTTGTAACAAGCTTTTTTCGATTCTAGTCAACAGTAATTAAATTTATGATATGGCAATACTTTGTAATACTAATATTAAATGGCGACTTTTATTTCACTA‑TGTTATAAGAGTTGCCATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2249376‑2249230 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccatttAATATTAGTATTACAAAGTATTGCCATATCATAAATTTAATTACTGTTGACTAGAATCGAAAAAAGCTTGTTACAAACGCATATTCAGTCAACTACTG > CP000730/2249273‑2249370 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |