New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1226920 =	45 (1.080)	3 (0.080)	3/240	NT	7.4%	intergenic (+53/‑612)	USA300HOU_1151/def2	hypothetical lipoprotein/formylmethionine deformylase
	?	CP000730	1227017 =	33 (0.850)					intergenic (+150/‑515)	USA300HOU_1151/def2	hypothetical lipoprotein/formylmethionine deformylase

GGTAACGCACATTTTGTTGTTTTAAGTAAATATATTAAAGAGTATGAATCAAACTATGAAACAGCGTCAGATGATTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCA  >  CP000730/1226781‑1227054                                                                                                                                            |                                                                                                                                       ggTAACGCACATTTTGTTGTTTTAAGTAAATATATTAAAGAGTATGAATCAAACTATGAAACAGCGTCAGATGATTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCaataataa                                                                                                                                       <  1:280171/141‑1 (MQ=255) ggTAACGCACATTTTGTTGTTTTAAGTAAATATATTAAAGAGTATGAATCAAACTATGAAACAGCGTCAGATGATTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCaataataa                                                                                                                                       >  1:367715/1‑141 (MQ=255)  gTAACGCACATTTTGTTGTTTTAAGTAAATATATTAAAGAGTATGAATCAAACTATGAAACAGCGTCAGATGATTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCaataataat                                                                                                                                      <  1:204438/141‑1 (MQ=255)  gTAACGCACATTTTGTTGTTTTAAGTAAATATATTAAAGAGTATGAATCAAACTATGAAACAGCGTCAGATGATTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCaataataat                                                                                                                                      <  1:485105/141‑1 (MQ=255)           aTTTTGTTGTTTTAAGTAAATATATTAAAGAGTATGAATCAAACTATGAAACAGCGTCAGATGATTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATaaa                                                                                                                             <  1:140619/141‑1 (MQ=255)            aactgttgaTTTAAGTAAATATATTAAACACTATGAATCAAACTATGAAACAGCGTCAGCTGATTCTATAAAATCGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCCATAATAATCACGATAAAc                                                                                                                            <  2:427011/138‑1 (MQ=255)                gttgttTTAAGTAAATATATTAAAGAGTATGAATCAAACTATGAAACAGCGTCAGATGATTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATcacaactcggtggc                                                                                                                        >  2:143241/1‑128 (MQ=255)                gttgttTTAAGTAAATATATTAAAGAGTATGAATCAAACTATGAAACAGCGTCAGATGATTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATc                                                                                                                        >  2:85657/1‑141 (MQ=255)                gttgttTTAAGTAAATATATTAAAGAGTATGAATCAAACTATGAAACAGCGTCAGATGATTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATc                                                                                                                        >  2:273101/1‑141 (MQ=255)                  tgttTTAAGTAAATATATTAAAGAGTATGAATCAAACTATGAAACAGCGTCAGATGATTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAg                                                                                                                      <  2:70979/141‑1 (MQ=255)                  tgttTTAAGTAAATATATTAAAGAGTATGAATCAAACTATGAAACAGCGTCAGATGATTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAg                                                                                                                      >  1:481759/1‑141 (MQ=255)                          gTAAATATATTAAAGAGTATGAATCAAACTATGAAACAGCGTCAGATGATTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTg                                                                                                              >  1:110124/1‑141 (MQ=255)                          gTAAATATAGTAAAGAGTATGAATCAAACTATGAAACAGCGTCAGATGATTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTg                                                                                                              <  1:175282/141‑1 (MQ=255)                             aaTATATTAAAGAGTATGAATCAAACTATGAAACAGCGTCAGATGATTCTTTGGAATAGTATTTGCTGTGTGAAAAATAAATAGTGTACTACATTAAATGATGGCAATAATAATCCCGATAGACAATCAGCATTAGTGAtt                                                                                                           >  1:300050/1‑141 (MQ=255)                               tatatTAAAGTGTATGAATCAAACTATGAAACAGCGTCAGATGATTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTAt                                                                                                         <  1:99489/141‑1 (MQ=255)                                   ttAAAGAGTATGAATCAAACTATGAAACAGCGTCAGATGATTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCaataata                                                                                                                                        <  1:44257/106‑1 (MQ=255)                                   ttAAAGAGTATGAATCAAACTATGAAACAGCGTCAGATGATTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCaataata                                                                                                                                        >  2:44257/1‑106 (MQ=255)                                   ttAAAGAGTATGAATCAAACTATGAAACAGCGTCAGATGATTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATcaca                                                                                                     >  2:423176/1‑141 (MQ=255)                                    tAAAGAGTATGAATCAAACTATGAAACAGCGTCAGATGATTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACAt                                                                                                    <  1:187517/141‑1 (MQ=255)                                    aaaaGAGTATGAATCAAACTATGAAACAGCGTCAGATGATTCTTTAAAATAGTATTAAATGTGAAAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACAt                                                                                                    <  1:323230/140‑1 (MQ=255)                                         actATGAATCAAACTATGAAACATAGTCAGATGATTCTTTAAAATAATATTTACTGTATGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAAACCCGATAAACAATCAGCATTACTGCTTATCACATAGAGt                                                                                               <  2:456843/139‑1 (MQ=255)                                            aTGAATCAAACTATGAAACAGCGTCAGATGATTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCGCATAGAGTTCg                                                                                            <  2:268193/141‑1 (MQ=255)                                              gAATCAAACTATGAAACAGCGTCAGATGATTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGta                                                                                          >  2:394847/1‑141 (MQ=255)                                               aaTCAAACTATGAAACAGCGTCAGATGATTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCCGCATTAATGCTTATCACATAGAGTTCGtaa                                                                                         >  1:225476/1‑141 (MQ=255)                                               aaTCAAACTATGAAACAGCGTCAGATGATTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGtaa                                                                                         >  1:225542/1‑141 (MQ=255)                                                    aagtATGAAACAGAGTCAGATGATTCTTTAAAATAGTATTTACTATGAGAAAAATAAATAGTGTACTACATTAAATAATCACAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAataact                                                                                    <  2:433513/138‑1 (MQ=255)                                                     aCTATGAAACAGCGTCAGATGATTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAataacta                                                                                   >  1:226840/1‑141 (MQ=255)                                                         tGAAACAGCGTCAGATGATTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAataactataac                                                                               >  1:499709/1‑141 (MQ=255)                                                          gAAACAGCGTCAGATGATTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAataactataact                                                                              >  1:354413/1‑141 (MQ=255)                                                               aGCGTCAGATGATTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATg                                                                         <  1:349609/141‑1 (MQ=255)                                                                  gTCAGATGATTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGAtt                                                                      >  1:140652/1‑141 (MQ=255)                                                                   tCAGATGATTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTc                                                                     >  1:331089/1‑141 (MQ=255)                                                                        tgatTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCaaa                                                                >  2:102836/1‑141 (MQ=255)                                                                        tgatTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCaaa                                                                >  2:108969/1‑141 (MQ=255)                                                                         gatTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAaat                                                               <  2:502743/141‑1 (MQ=255)                                                                           ttCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAaataa                                                             <  2:319258/141‑1 (MQ=255)                                                                                  aaaTAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGa                                                      >  1:66264/1‑141 (MQ=255)                                                                                       gTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATATTCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTc                                                 >  2:438391/1‑141 (MQ=255)                                                                                       gTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTc                                                 >  1:443029/1‑141 (MQ=255)                                                                                         aTTTCCTGTGTGAAAAATAAATAGTGTACTACATTAAATAGTCGGAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCAt                                               <  2:444261/141‑1 (MQ=255)                                                                                           ttACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCg                                             <  1:412122/141‑1 (MQ=255)                                                                                            tACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCgg                                            >  1:337743/1‑141 (MQ=255)                                                                                                 tgtgAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGattt                                       >  1:170229/1‑141 (MQ=255)                                                                                                   tgatgaacaaggtaatgtcactttataaattgataaaaataAATCCCGATAAACAATCAGAATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGatttat                                     >  1:172436‑M1/42‑141 (MQ=255)                                                                                                      tgaacaaggtaatgtcactttataaattgataaaaataAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTAtttt                                  >  1:51494‑M1/39‑141 (MQ=255)                                                                                                      aaaaTAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTAtttt                                  <  1:257744/141‑1 (MQ=255)                                                                                                          taaataGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATc                              >  1:432619/1‑141 (MQ=255)                                                                                                           aaggtaatgtcactttataaattgataaaaataAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCa                             >  2:128416‑M1/34‑141 (MQ=255)                                                                                                             ataGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAAt                           >  1:396569/1‑141 (MQ=255)                                                                                                             ataGTGTACTACATAAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAAt                           >  2:203118/1‑141 (MQ=255)                                                                                                               aGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAAttt                         <  2:459712/141‑1 (MQ=255)                                                                                                                gtgtACTACATTAAATAATCGCAATAATAATCCCTATAAACAATAAGCATTACTCCTTATAACATAGTGTTCGTAATAACTATAACTCTATTATTCGCCATTAATAAATGATTATCCTCCGGTTCTATTTTTTTCAATTta                        >  2:148994/1‑141 (MQ=255)                                                                                                                      tacATTAAATACTCGCACTTATACCCCATATAAACAGTCAGCAGTACTTCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGt                  <  1:143241/141‑1 (MQ=255)                                                                                                                              ataatCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACCCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCCATTTATAAAGTGACATTAc          >  2:374600/1‑141 (MQ=255)                                                                                                                                      aataataatCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTtca  >  1:505326/1‑141 (MQ=255)                                                                                                                                            |                                                                                                                                       GGTAACGCACATTTTGTTGTTTTAAGTAAATATATTAAAGAGTATGAATCAAACTATGAAACAGCGTCAGATGATTCTTTAAAATAGTATTTACTGTGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCA  >  CP000730/1226781‑1227054

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.