New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1226920 =	45 (1.080)	3 (0.080)	3/240	NT	7.4%	intergenic (+53/‑612)	USA300HOU_1151/def2	hypothetical lipoprotein/formylmethionine deformylase
	?	CP000730	1227017 =	33 (0.850)					intergenic (+150/‑515)	USA300HOU_1151/def2	hypothetical lipoprotein/formylmethionine deformylase

TGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCAGCAGGTTTGAAAACAGTAATCACTGCACTAATAATTGCTAAAATGTGTGGGATACCTGTCCAACAGAATATTAAGTGTAGAATACCTTGCATATTCTTGC  >  CP000730/1226877‑1227157                                                                                                                                             |                                                                                                                                             tgtgAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGattt                                                                                                                                              >  1:170229/1‑141 (MQ=255)   tgatgaacaaggtaatgtcactttataaattgataaaaataAATCCCGATAAACAATCAGAATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGatttat                                                                                                                                            >  1:172436‑M1/42‑141 (MQ=255)      tgaacaaggtaatgtcactttataaattgataaaaataAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTAtttt                                                                                                                                         >  1:51494‑M1/39‑141 (MQ=255)      aaaaTAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTAtttt                                                                                                                                         <  1:257744/141‑1 (MQ=255)          taaataGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATc                                                                                                                                     >  1:432619/1‑141 (MQ=255)           aaggtaatgtcactttataaattgataaaaataAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCa                                                                                                                                    >  2:128416‑M1/34‑141 (MQ=255)             ataGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAAt                                                                                                                                  >  1:396569/1‑141 (MQ=255)             ataGTGTACTACATAAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAAt                                                                                                                                  >  2:203118/1‑141 (MQ=255)               aGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAAttt                                                                                                                                <  2:459712/141‑1 (MQ=255)                gtgtACTACATTAAATAATCGCAATAATAATCCCTATAAACAATAAGCATTACTCCTTATAACATAGTGTTCGTAATAACTATAACTCTATTATTCGCCATTAATAAATGATTATCCTCCGGTTCTATTTTTTTCAATTta                                                                                                                               >  2:148994/1‑141 (MQ=255)                      tacATTAAATACTCGCACTTATACCCCATATAAACAGTCAGCAGTACTTCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGt                                                                                                                         <  1:143241/141‑1 (MQ=255)                              ataatCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACCCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCCATTTATAAAGTGACATTAc                                                                                                                 >  2:374600/1‑141 (MQ=255)                                 tgataaaaataaatcccgatgacaatcatttattatttgcgaatcatagagttatagttattacgaactctatgtgataagcagtaatgctgattgtttatcgggattTATTTTTATCAATTTATAAAGTGACATTACCtt                                                                                                              >  2:128416‑M2/109‑141 (MQ=255)                                      aataataatCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTtca                                                                                                         >  1:505326/1‑141 (MQ=255)                                      aaaataaatcccgatgacaatcatttattatttgcgaatcatagagttatagttattacgaactctatgtgataagcagtaatgctgattgtttatcgggattTATTTTTATCAATTTATAAAGTGACATTACCTTGTtca                                                                                                         >  1:51494‑M2/104‑141 (MQ=255)                                         ataaatcccgatgacaatcatttattatttgcgaatcatagagttatagttattacgaactctatgtgataagcagtaattctgattgtttatcgggattTATTTTTATCAATTTATAAAGTGACATTACCTTGTtcatca                                                                                                      >  1:172436‑M2/101‑141 (MQ=255)                                               CCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCAGCAGGt                                                                                                >  2:442697‑M1/1‑141 (MQ=255)                                                         aaTCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCAGCAGGTTTGAAAACAg                                                                                      <  1:394847/141‑1 (MQ=255)                                                         aaTCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCAGCAGGTTTGAAAACAg                                                                                      <  2:155516/141‑1 (MQ=255)                                                                   aCTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCAGCAGGTTTGAAAACAGTAATCACTGc                                                                            <  2:119708/141‑1 (MQ=255)                                                                     tGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCAGCAGGTTTGAAAACAGTAATCACTGCAc                                                                          <  2:331089/141‑1 (MQ=255)                                                                     tGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCAGCAGGTTTGAAAACAGTAATCACTGCAc                                                                          <  2:404216/141‑1 (MQ=255)                                                                      gattATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCAGCAGGTTTGAAAACAGTAATCACTGCACt                                                                         <  2:310722/139‑1 (MQ=255)                                                                          aTCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCAGCAGGTTTGAAAACAGTAATCACTGCACtaata                                                                     >  2:141607/1‑141 (MQ=255)                                                                          aTCACATAGAGTTCGTAATAACTATAACTCTATGATTAGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATAAGAAAAAAAAAAAACAGTAATCACTGCACtaata                                                                     <  2:110124/141‑1 (MQ=255)                                                                           tCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCAGCAGGTTTGAAAACAGTAATCACTGCACtaataa                                                                    <  1:310131/141‑1 (MQ=255)                                                                           tCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCAGCAGGTTTGAAAACAGTAATCACTGCACtaataa                                                                    <  1:430294/141‑1 (MQ=255)                                                                             acaTAGAGTTCGTAATAACTATAACTCTATGATTCACAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCAGCAGGTTTGAAAACAGTAATCACTGCACTAATAAtt                                                                  >  1:288122/1‑141 (MQ=255)                                                                                   agTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCAGCAGGTTTGAAAACAGTAATCACTGCACTAATAATTGCTaaa                                                            >  1:300677/1‑141 (MQ=255)                                                                                       cGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCAGCAGGTTTGAAAACAGTAATCACTGCACTAATAATTGCTAAAAtgt                                                        <  1:35689/141‑1 (MQ=255)                                                                                        gTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCAGCAGGTTTGAAAACAGTAATCACTGCACTAATAATTGCTAAAAtgtg                                                       >  1:243400/1‑141 (MQ=255)                                                                                             aactataactCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCAGCAGGTTTGAAAACAGTAATCACTGCACTAATAATTGCTAAAATGTGTGGGa                                                  <  2:367715/141‑1 (MQ=255)                                                                                               ctataactCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCAGCAGGTTTGAAAACAGTAATCACTGCACTAATAATTGCTAAAATGTGTGGGTTa                                                <  2:225542/141‑1 (MQ=255)                                                                                               atataactCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCAGCAGGTTTGAAAACAGTAATCACTGCACTAATAATTGCTAAAATGTGTGGGATa                                                <  2:225476/140‑1 (MQ=255)                                                                                                 ataactCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCAGCAGGTTTGAAAACAGTAATCACTGCACTAATAATTGCTAAAATGTGTGGGATAcc                                              <  1:85657/141‑1 (MQ=255)                                                                                                           gATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCAGCAGGTTTGAAAACAGTAATCACTGCACTAATAATTGCTAAAATGTGTGGGATACCTGTCCAACAg                                    <  1:273101/141‑1 (MQ=255)                                                                                                              tCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCAGCAGGTTTGAAAACAGTAATCACTGCACTAATAATTGCTAAAATGTGTGGGATACCTGTCCAACAGAat                                 <  1:312489/141‑1 (MQ=255)                                                                                                                gCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCAGCAGGTTTGAAAACAGTAATCACTGCACTAATAATTGCTAAAATGTGTGGGATACCTGTCCAACAGAatat                               <  2:396569/141‑1 (MQ=255)                                                                                                                       ataaATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCAGCAGGTTTGAAAACAGTAATCACTGCACTGATAATTGCTAAAATGTGTGGGATACCTGTCCAACAGAATATAAAgtgt                        >  1:205654/1‑141 (MQ=255)                                                                                                                       ataaATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCAGCAGGTTTGAAAACAGTAATCACTGCACTAATAATTGCTAAAATGTGTGGGATACCTGTCCAACAGAATATTAAgtgt                        <  1:423176/141‑1 (MQ=255)                                                                                                                       ataaATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCAGCAGGTTTGAAAACAGTAATCACTGCACTAATAATTGCTAAAATGTGTGGGATACCTGTCCAACAGAATATTAAgtgt                        >  1:501601/1‑141 (MQ=255)                                                                                                                                tGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCAGCAGGTTTGAAAACAGTAATCACTGCACTAATAATTGCTAAAATGTGTGGGATACCTGTCCAACAGAATATTAAGTGCAGAATACCt               >  1:50673/1‑141 (MQ=255)                                                                                                                                tGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCAGCAGGTTTGAAAACAGTAATCACTGAACTCATCACTACTCACACGTGCGCGCTCTCAACACAACAGAATATTCAGTCTAGAATAACt               >  1:100114/1‑141 (MQ=255)                                                                                                                                             tatttTTATCAATTTATAAAGTGACATTACCTTGTTCATCAGCAGGTTTGAAAACAGTAATCACTGCACTAATAATTGCTAAAATGTGTGGGATACCTGTCCAACAGAATATTAAGTGTAGAATACCTTGCATATTCTTGc  >  2:435321/1‑141 (MQ=255)                                                                                                                                             tatttTTATCAATTTATAAAGTGACATTACCTTGTTCATCAGCAGGTTTGAAAACAGTAATCACTGCACTAATAATTGCTAAAATCTGTGGGATACCTGTCCAACAGAATATTAAGTGTAGAATACCTTGCATATTCTTGc  >  2:437497/1‑141 (MQ=255)                                                                                                                                             |                                                                                                                                             TGTGAAAAATAAATAGTGTACTACATTAAATAATCGCAATAATAATCCCGATAAACAATCAGCATTACTGCTTATCACATAGAGTTCGTAATAACTATAACTCTATGATTCGCAAATAATAAATGATTGTCATCGGGATTTATTTTTATCAATTTATAAAGTGACATTACCTTGTTCATCAGCAGGTTTGAAAACAGTAATCACTGCACTAATAATTGCTAAAATGTGTGGGATACCTGTCCAACAGAATATTAAGTGTAGAATACCTTGCATATTCTTGC  >  CP000730/1226877‑1227157

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.