New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	528464 =	34 (0.820)	3 (0.080)	3/230	NT	9.8%	intergenic (+5/‑162)	tatD/rnmV	TatD family deoxyribonuclease/hypothetical protein
	?	CP000730	528541 =	25 (0.670)					intergenic (+82/‑85)	tatD/rnmV	TatD family deoxyribonuclease/hypothetical protein

AAGAAGTGTGCGAACAAACAACTAAAAATGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAGCGTGTTAA  >  CP000730/528401‑528681                                                                                                                                             |                                                                                                                                             aagaagTGTGCGAACAAACAACTAAAAATGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACttttt                                                                                                                                              <  1:188953/141‑1 (MQ=255)    aagTGTGCGAACAAACAACTAAAAATGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTttaa                                                                                                                                           >  1:193271/1‑141 (MQ=255)      gtgtGCGAACAAACAACTAAAAATGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTttaaat                                                                                                                                         <  2:153738/141‑1 (MQ=255)       tcaaagctctaaccatctctatcgcacgtattccacatgcacgatattttaatttaaAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTttaaatt                                                                                                                                        >  1:188001‑M1/58‑141 (MQ=255)         tgCGAACAAACAACTAAAAATGCCGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTAAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTttaaattaa                                                                                                                                      >  2:69737/1‑141 (MQ=255)          gCGAACAAACAACTAAAAATGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTttaaattaaa                                                                                                                                     >  2:261376/1‑141 (MQ=255)                aaacaaCTAAAAATGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCg                                                                                                                               <  1:379139/141‑1 (MQ=255)                  acaacTAAAAATGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTg                                                                                                                             <  1:426001/141‑1 (MQ=255)                        aaaaaTGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCAtgtg                                                                                                                       <  1:261376/141‑1 (MQ=255)                         aaaaTGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTgg                                                                                                                      >  1:247762/1‑141 (MQ=255)                             tGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATa                                                                                                                  >  1:369631/1‑141 (MQ=255)                                  agaAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGc                                                                                                             >  2:230776/1‑141 (MQ=255)                                  agaAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGc                                                                                                             <  1:246008/141‑1 (MQ=255)                                             aatttaaATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATgg                                                                                                  >  1:186003/1‑141 (MQ=255)                                                         aatttaaaaaagtgagaaagaaccatagcatattaaacgaatatagcatcgtttacatttatggcggtgatctttctcacttttTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGa                                                                                      >  1:188001‑M2/85‑141 (MQ=255)                                                             gTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAAtt                                                                                  >  2:356/1‑141 (MQ=255)                                                                  aagtgagaaagaaccatagcatattaaacgaatatagcatcgtttacatttatggcggtgatctttctcacttttTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGaa                                                                             >  1:347188‑M2/76‑141 (MQ=255)                                                                     TGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTg                                                                          >  1:118885‑M1/1‑141 (MQ=255)                                                                     TGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTg                                                                          >  1:153153‑M1/1‑141 (MQ=255)                                                                        gaaagaaccatagcatattaaacgaatatagcatcgtttacatttatggcggtgatctttctcacttttTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGAAGGTCCGAGCTTTGAAATTAAGAATTGTAg                                                                       >  1:353199‑M2/70‑141 (MQ=255)                                                                         AAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAgg                                                                      >  1:420228‑M1/1‑141 (MQ=255)                                                                              tCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGc                                                                 <  2:100918/141‑1 (MQ=255)                                                                                aCCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGt                                                               <  1:229768/141‑1 (MQ=255)                                                                                     aaTAAATGTAAACGAAGCTCTATTCGTGTAATATGCTATGCTACTTTCTCAATTTTTTAATTTAAAATATCGTGCATGTGGCATAAATGCGATCGAGCTGGATAGACCTTTGAAAATCACACTTCTAGGACGGCGTTTTaa                                                          >  2:297814/2‑141 (MQ=255)                                                                                       tAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATc                                                                                                                                >  2:25463/1‑69 (MQ=255)                                                                                       tAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATc                                                                                                                                <  1:25463/69‑1 (MQ=255)                                                                                       tAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAAt                                                        <  2:482365/141‑1 (MQ=255)                                                                                         aaTGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGa                                                      >  1:332483/1‑141 (MQ=255)                                                                                          aTGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGaa                                                     <  2:39556/141‑1 (MQ=255)                                                                                          aTGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGaa                                                     >  2:355128/1‑141 (MQ=255)                                                                                                    tGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAg                                           <  1:98866/141‑1 (MQ=255)                                                                                                         tatTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTtat                                      <  1:356/141‑1 (MQ=255)                                                                                                           ttCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAg                                    >  1:266271/1‑141 (MQ=255)                                                                                                             cGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGtt                                  <  2:186003/141‑1 (MQ=255)                                                                                                                           tgtttctttctCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACgaga                    <  2:332861/138‑1 (MQ=255)                                                                                                                                 tttctcacttttTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATAc              <  1:44133‑M2/129‑1 (MQ=255)                                                                                                                                      cacttttTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAGc         >  1:302864‑M2/8‑141 (MQ=255)                                                                                                                                      cacttttTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAGc         >  1:302868‑M2/8‑141 (MQ=255)                                                                                                                                       acttttTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAGCg        >  2:342122‑M2/7‑141 (MQ=255)                                                                                                                                             ttaaattaaaATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAGCGTGTTaa  <  2:452166/141‑1 (MQ=255)                                                                                                                                             ttaaattaaaATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAGCGTGTTaa  <  2:329321/141‑1 (MQ=255)                                                                                                                                             |                                                                                                                                             AAGAAGTGTGCGAACAAACAACTAAAAATGCAGAGAAATTGTTTAATTTAAATTCATAAAGTTAAAAGTGAGAAAGATCACCGCCATAAATGTAAACGATGCTATATTCGTTTAATATGCTATGGTTCTTTCTCACTTTTTTAAATTAAAATATCGTGCATGTGGAATACGTGCGATAGAGATGGTTAGAGCTTTGAAATTAAGAATTGTAGGAAGGCGTTTTAAATGAAAATCAATGAGTTTATAGTTGTAGAAGGACGAGATGATACTGAGCGTGTTAA  >  CP000730/528401‑528681

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.