| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 1417767 = | 92 (1.010) | 3 (0.040) | 3/254 | 13.2 | 3.5% | coding (152/831 nt) | oppD | oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein |
| ? | CP000730 | 1417824 = | 83 (1.000) | coding (95/831 nt) | oppD | oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATGCATAAAATATTTTCAAAGAATAACCTGATATTTTTTGTATTCGTTGCATTTATTTTTGTGGTAATTGTACTGCAATTCTTTGTCAGTAGTGAAAATGCAACCAAAGTCAATTTATCACAAACTTTTGAACCTATTAGTTGGTTGCATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1417918‑1417767‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggttgcatttTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAGGTTATTCTTTGAAAATATTTTATGCATGACGGTCACTACTTTCTGATATCAATGGTGTATTGGTTTTGATTT > CP000730/1417824‑1417963 ATGCATAAAATATTTTCAAAGAATAACCTGATATTTTTTGTATTCGTTGCATTTATTTTTGTGGTAATTGTACTGCAATTCTTTGTCAGTAGTGACAATGCAACCAAAGTCAATTTATCACAAACTTTTGAACCTATTAGT > 1:416580/1‑141 ATAAAATATTTTCAAAGAATAACCTGATATTTTTTGTATTCGTTGCATTTATTTTTGTGGTAATTGTACTGCAATTCTTTGTCAGTAGTGAAAATGCAACCAAAGTCAATTTATCACAAACTTTTGAACCTATTAGTTGGT < 1:441533/141‑1 TAAAATATTTTCAAAGACTAACCTGATATTTTTTGTATTCGTTGCATTTCTTTTTGTGGTAATTGTACTGCAATTCTTTGTCAGTAGTGAAAATGCAACCAAAGTCAATTTATCACACACTTTTGAACCTATTAGTTGGTT < 2:480301/141‑1 AAAATATTTTCAAAGAATAACCTGATATTTTTTGTATTCGTTGCATTTATTTTTGTGGTAATTGTACTGCAATTCTTTGTCAGTAGTGAAAATGCACACAAAGTCAATTTATCACAAACTTTTGAACCTATTAGTTGGTTG < 1:340730/141‑1 AAAATATTTTCAAAGAATAACCTGATATTTTTTGTATTCGTTGCATTTATTTTTGTGGTAATTGTACTGCAATTCTTTGTCAGTAGTGAAAATGCAACCAAAGTCAATTTATCACAAACTTTTGAACCTATTAGTTGGTTG < 1:840704/141‑1 AATATTTTCAAAGAATAACCTGATATTTTTTGTATTCGTTGCATTTATTTTTGTGGTAATTGTACTGCAATTCTTTGTCAGTAGTGAAAATGCAACCAAAGTCAATTTATCACAAACTTTTGAACCTATTAGTTGGTTGCA < 2:942942/141‑1 AATATTTTCAAAGAATAACCTGATATTTTTTGTATTCGTTGCATGTATTTTTGTGGTAATTGTACTGCAAATCTTTGTCAGTAGTGAAAATGCAACCAAAGTCAATTTATCACAAACTTTTGAACCTATTAGTTGGTTGaa > 1:692648/1‑139 TATTTTCAAAGAATAACCTGATATTTTTTGTATTCGTTGCATTTATTTTTGTGGTAATTGTACTGCAATTCTTTGTCAGTAGTGAAAATGCAACCAAAGTCAATTTATCACAAACTTTTGAACCTATTAGTTGGTTGCATT < 2:511497/141‑1 TATTTTCAAAGAATAACCTGATATTTTTTGTATTCGTTGCATTTATTTTTGTGGTAATTGTACTGCAATTCTTTGTCAGTAGTGAAAATGCAACCAAAGTCAATTTATCACAAACTTTTGAACCTATTAGTTGGTTGCATT < 2:89/141‑1 ATTTTCAAAGAATAACCTGATATTTTTTGTATTCGTTGCATTAATTTTTGTGGTAATTGTACTGCAAGTCTTTGTCAGTAGTGAAAATGCAACCAAAGTCAATTTATCACAAACTTTTGAACCTATTAGTTGGTTGCATTT > 1:122017/1‑141 GCAACCAAAGTCAATTTATCACAAACTTTTGAACCTATTAGTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAGGTTATTCTTTGAAAATATTT > 2:68792/1‑141 TATCACAAACTTTTGAACCTATTAGTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAGGTTATTCTTTGA < 2:541601/117‑1 TATCACAAACTTTTGAACCTATTAGTTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAGGTTATTCTTTGA > 1:541601/1‑117 TTGGTTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATA‑TAAAAATATCAGGTTATTCTTTGAAAATATTTTATGCATGACGGTCACTACTTTCTGATATCAATGGTGTATTG > 2:877360/1‑141 TTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAGGTTATTCTTTGAAAATATTTTATGCATGACGGTCACTACTTTCTGATATCAATGGTGTATTGGTT < 1:225756/141‑1 TTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAGGTTATTCTTTGAAAATATTTTATGCATGACGGTCACTACTTTCTGATATCAATGGTGTATTGGTT < 1:523693/141‑1 TTGCATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAGGTTATTCTTTGAAAATATTTTATGCATGACGGTCACTACTTTCTGATATCAATGGTGTATTGGTT < 2:358051/141‑1 ATTTTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAGGTTATTCTTTGAAAATATTTTATGCATGACGGTCACTACTTTCTGATATCAATGGTGTATTGGTTTTGA > 1:26609/1‑141 TTTCACTACTGACAAAGAAGTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAGGTTATTCTTTGAAAATATTTTATGCATGACGGTCACTACTTTCTGATATCAATGGTGTATTGGTTTTGATT < 1:155064/141‑1 TTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAGGTTATTCTTTGAAAATATTTTATGCATGACGGTCACTACTTTCTGATATCAATGGTGTATTGGTTTTGATTT < 1:747643/141‑1 ATGCATAAAATATTTTCAAAGAATAACCTGATATTTTTTGTATTCGTTGCATTTATTTTTGTGGTAATTGTACTGCAATTCTTTGTCAGTAGTGAAAATGCAACCAAAGTCAATTTATCACAAACTTTTGAACCTATTAGTTGGTTGCATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1417918‑1417767‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggttgcatttTCACTACTGACAAAGAATTGCAGTACAATTACCACAAAAATAAATGCAACGAATACAAAAAATATCAGGTTATTCTTTGAAAATATTTTATGCATGACGGTCACTACTTTCTGATATCAATGGTGTATTGGTTTTGATTT > CP000730/1417824‑1417963 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |