| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 1910735 = | 40 (0.440) | 11 (0.130) | 4/268 | 12.9 | 19.0% | intergenic (+268/+1815) | sigS/ytbE | camphor resistance protein/possible aldo/keto reductase |
| ? | CP000730 | 1910822 = | 55 (0.630) | intergenic (+355/+1728) | sigS/ytbE | camphor resistance protein/possible aldo/keto reductase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGGCAAAGTGTCTTATTTTTTAAAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1910878‑1910735‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatacTACGTATTAACATGTAATTTTACTTTTACATACTT‑T‑AAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTCGCGATATGTTAATGAAATTGTTGAAACGAT > CP000730/1910822‑1910960 GGGCAAAGTGTCTTATTTTTTAAAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAA < 1:742049/141‑1GGGCAAAGTGTCTTATTTTTTAAAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAA > 1:819314/1‑141 GGCAAAGTGTCTTATTTTTTAAAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAAT > 2:1042863/1‑141 GCAAAGTGTCTTATTTTTTAAAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATTACTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATA < 1:732341/141‑1 GCAAAGTGTCTTATTTTTTAAAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATA < 1:124039/141‑1 TGTCTTATTTTTTAAAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATACAATACTTCGT < 2:755675/141‑1 ttatTTTTTTAAAGTATGTAAAAGTAAAATTCCATGTTAATACGTAGTATGAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATACAATACTTCGTATT < 2:318107/137‑1 CTTATTTTTTAAAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGTCGCCCTCGGAAAGCGTAGCCATTCAATACGACGTATT < 2:412253/141‑1 CATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTAACATGTAATTTTACTTTTAAATACTT‑T‑GAAA > 1:907734/1‑141 GTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACTACGTATTAACATGTAATTTTACTTTTACATACTTAT‑AAAAAATAAGACACTTT > 2:233292/1‑141 ATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACTACGTATTAACATGTAATTTTACTTTTACATACTT‑T‑AAAAAATAAGACACTTTGCCCAAC > 2:950111/1‑141 TGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTACATACTT‑T‑AAAAAATAAGACACTTTGCCCAACTT > 2:893397/1‑141 TGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTGAAATACTT‑A‑AAAAAATAAAACACTTTGCCCAACTT > 1:538842/1‑141 GCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATT‑AATACTACGTATTAACGTGTAATTTTACTTTGAAATACTT‑TAAAAAAATAAGACACTTTGCCCAACTTg > 1:1047182/1‑140 GAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACTACGTATTAACATGTAATTTTACTTTTACATACTT‑T‑AAAAAATAAGACACTTTGCCCAACTTACA > 1:464822/1‑141 TGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACTACGTATTAACATGTAATTTTACTTTTACATACTT‑T‑AAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTG < 1:950111/141‑1 ATACTACGTATTAACATGTAATTTTACTTTTACATACTT‑T‑AAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTCGCGATATGTTAATGAAATTGTTGAAACG > 1:883988/1‑141 TACTACGTATTAACATGTAATTTTACTTTTACATACTT‑T‑AAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTCGCGATATGTTAATGAAATTGTTGAAACGA > 2:781057/1‑141 TACTACGTATTAACATGTAATTTTACTTTTACATACTT‑T‑AAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTCGCGATATGTTAATGAAATTGTTGAAACGA > 2:647816/1‑141 ACTACGTATTAACATGTAATTTTACTTTTACATACTT‑T‑AAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTCGCGATATGTTAATGAAATTGTTGAAACGAT > 2:608455/1‑141 GGGCAAAGTGTCTTATTTTTTAAAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1910878‑1910735‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatacTACGTATTAACATGTAATTTTACTTTTACATACTT‑T‑AAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTCGCGATATGTTAATGAAATTGTTGAAACGAT > CP000730/1910822‑1910960 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |