New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1910735 =	40 (0.440)	11 (0.130)	4/268	12.9	19.0%	intergenic (+268/+1815)	sigS/ytbE	camphor resistance protein/possible aldo/keto reductase
	?	CP000730	1910822 =	55 (0.630)					intergenic (+355/+1728)	sigS/ytbE	camphor resistance protein/possible aldo/keto reductase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATAATGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTAAAAAATAAGACACTTT  >  CP000730/1910600‑1910874                                                                                                                                         |                                                                                                                                            ataatGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTg                                                                                                                                        <  1:376828/141‑1 (MQ=255)  taatGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGa                                                                                                                                       >  2:358244/1‑141 (MQ=255)    atGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATTCAATACTTCGTATTGAAt                                                                                                                                     >  1:537639/1‑141 (MQ=255)    atGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAAt                                                                                                                                     >  2:982032/1‑141 (MQ=255)          aTGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTc                                                                                                                               <  2:1008561/141‑1 (MQ=255)           tGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATCCACTACTTCGTATTGAATGGCTTCg                                                                                                                              >  2:267677/1‑141 (MQ=255)           tGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCg                                                                                                                              >  2:578112/1‑141 (MQ=255)               aaTAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCtt                                                                                                                           <  1:761925/141‑1 (MQ=255)                 tAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTcc                                                                                                                        <  1:872524/141‑1 (MQ=255)                      tctcCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAggg                                                                                                                   <  2:1030952/141‑1 (MQ=255)                        tcCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTg                                                                                                                 >  1:264934/1‑141 (MQ=255)                         ccAAACTGGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGc                                                                                                                >  1:644043/1‑141 (MQ=255)                           aaaCTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCg                                                                                                              <  1:443206/141‑1 (MQ=255)                           aaaCTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCg                                                                                                              <  1:443007/141‑1 (MQ=255)                             aCTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGtc                                                                                                            <  1:84441/141‑1 (MQ=255)                              cTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCTAAAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGtc                                                                                                            <  1:486653/141‑1 (MQ=255)                               tAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGtctc                                                                                                          >  1:97092/1‑141 (MQ=255)                                 gTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAg                                                                                                        >  1:411678/1‑141 (MQ=255)                                  tCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGc                                                                                                       <  2:392267/141‑1 (MQ=255)                                   cGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGcc                                                                                                      <  1:21918/141‑1 (MQ=255)                                    gAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCt                                                                                                     >  1:456729/1‑141 (MQ=255)                                     aaaaTAAAGGGAGTGGGACATAAATCCCT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTc                                                                                                    <  2:721734/141‑1 (MQ=255)                                      aaaTAAAGGGAGTGGGACATAAATCCCT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCg                                                                                                   <  1:944701/141‑1 (MQ=255)                                        aTAAAGGGAGTGGGACATAAATCCCT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGt                                                                                                 <  2:158361/141‑1 (MQ=40)                                         tAAAGGGAGTGGGACATAAATCCCT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTc                                                                                                <  1:129900/141‑1 (MQ=40)                                           aaGGGAGTGGGACATAAATCCCT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCtt                                                                                              >  1:689713/1‑141 (MQ=38)                                             gggAGTGGGACATAAATCCCT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCg                                                                                            >  1:353258/1‑141 (MQ=37)                                                  tGGGACATAAATCCCT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTgg                                                                                       <  1:910369/141‑1 (MQ=32)                                                   gggACATAAATCCCT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGc                                                                                      <  1:179399/141‑1 (MQ=32)                                                    ggACATAAATCCAT‑AAAAAAAATCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCa                                                                                     <  1:56916/141‑1 (MQ=17)                                                     gACATAAATCCAT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCAc                                                                                    <  2:904222/141‑1 (MQ=17)                                                       aataaaacaat‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTg                                                                                  <  2:572768/131‑1 (MQ=12)                                                           aaTCCCT‑AAAAAAAAGCAGTAAGATAATTGTCAATTAGAAAATAGCTTACGGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCGCGGTCGTCGACGGGCACTGCTcc                                                                              >  2:98496/1‑141 (MQ=11)                                                              cccT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTAATGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTc                                                                           <  2:375084/141‑1 (MQ=17)                                                                                                                               aCAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTAAAAAATa           >  1:1016408/1‑141 (MQ=31)                                                                                                                                cAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTAAAAAATaa          >  1:385314/1‑141 (MQ=32)                                                                                                                                 aaTACGTCGTATTGAATGGCTACGCTTTCCGAGGGCGACGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTAAAAAATAAg         >  2:412253/1‑141 (MQ=11)                                                                                                                                    acgaagTATTGTATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTAAAAAATAAGaca      >  2:755675/6‑141 (MQ=16)                                                                                                                                     cTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTAAAAAATAAGacac     >  1:780492/1‑141 (MQ=33)                                                                                                                                       tCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTAAAAAATAAGACACtt   >  1:400731/1‑141 (MQ=33)                                                                                                                                        cGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTAAAAAATAAGACACttt  <  1:59546/141‑1 (MQ=33)                                                                                                                                        cGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGACACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTAAAAAATAAGACACttt  >  2:469093/1‑141 (MQ=18)                                                                                                                                         |                                                                                                                                            ATAATGTGAATGTCAATAAATTCTCCAAACTAGTCGAAAATAAAGGGAGTGGGACATAAATCCCT‑AAAAAAAAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTAAAAAATAAGACACTTT  >  CP000730/1910600‑1910874

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.