New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1804958	26 (0.290)	11 (0.130)	4/268	12.9	21.1%	intergenic (+1930/+395)	cycA/pykA	APC family amino acid‑polyamine‑organocation transporter/pyruvate kinase
	?	CP000730	1910822 =	57 (0.650)					intergenic (+355/+1728)	sigS/ytbE	camphor resistance protein/possible aldo/keto reductase
Rejected: Coverage evenness skew score above cutoff.

AAGTGTTTTATTTTTTTAAAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCATCCTGTTTTATATGCAACTTATAATATTAAATTGCGTACTTGGCTCAA  >  CP000730/1804819‑1805093                                                                                                                                            |                                                                                                                                        aaGTGTTTTATTTTTTTAAAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACg                                                                                                                                        <  1:776828/141‑1 (MQ=35)  aGTGTTTTATTTTTTTAAAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGa                                                                                                                                       >  2:238654/1‑141 (MQ=35)   gtgtTTTATTTTTTTAAAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATACAATActtc                                                                                                                                      <  1:772045/141‑4 (MQ=255)       tttATTTTTTTAAAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTAt                                                                                                                                  >  1:118390/1‑141 (MQ=33)        ttATTTTTTTAAAGTATGTAAAAGTAAAATTCCATGTTAATACGTAGTATGAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATACAATActtcgtatt                                                                                                                                 <  2:318107/141‑9 (MQ=11)           tttttttAAAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGta                                                                                                                              <  1:1034646/141‑1 (MQ=11)                                                                                              aGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCATCCTGtt                                           >  2:913775/1‑141 (MQ=32)                                                                                               gACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCATCCTGttt                                          <  2:702396/141‑1 (MQ=32)                                                                                                aCCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCATCCTGtttt                                         >  2:1024984/1‑141 (MQ=32)                                                                                                     ggCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCATCCTGTTTTATATg                                    >  2:147488/1‑141 (MQ=37)                                                                                                        tGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCATCCTGTTTTATATGCaa                                 <  2:118390/141‑1 (MQ=39)                                                                                                           gaCGGCACCCTAGGAAAGCGAAGCCATTCAATANGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCATCCTGTTTTATATGNAACtt                              >  1:12141/1‑141 (MQ=255)                                                                                                            aCGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCATCCTGTTTTATATGCAACTta                             >  1:713091/1‑141 (MQ=255)                                                                                                              ggCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCATCCTGTTTTATATGCAACTtata                           <  1:706688/141‑1 (MQ=255)                                                                                                                 aCCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAAATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCATCCTGTTTTATATGCAACTTataata                        <  1:208625/141‑1 (MQ=255)                                                                                                                 aCCCGAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCATCCTGTTTTATATGCAACTTataata                        <  2:356/141‑1 (MQ=255)                                                                                                                  cccTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCATCCTGTTTTATATGCAACTTATAatat                       >  1:938964/1‑141 (MQ=255)                                                                                                                     tAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCATCCTGTTTTATATGCAACTTATAATATTaa                    <  2:199804/141‑1 (MQ=255)                                                                                                                     tAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCATCCTGTTTTATATGCAACTTATAATATTaa                    <  2:308208/141‑1 (MQ=255)                                                                                                                            gCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCATCCTGTTTTATATGCAACTTATAATATTAAATTGCGt             <  2:125838/141‑1 (MQ=255)                                                                                                                            gCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCATCCTGTTTTATATGCAACTTATAATATTAAATTGCGt             >  1:234703/1‑141 (MQ=255)                                                                                                                                aGCCATTCAATACGAAGTATCGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCATCCTGTTTTATATGCAACTTATAATATTAAATTGCGTACtt         >  1:600808/1‑141 (MQ=255)                                                                                                                                 gCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCATCCTGTTTTATATGCAACTTATAATATTAAATTGCGTACTTg        <  2:693351/141‑1 (MQ=255)                                                                                                                                  ccATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCATCCTGTTTTATATGCAACTTATAATATTAAATTGCGTACTTgg       >  2:979957/1‑141 (MQ=255)                                                                                                                                  ccATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATAGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCATCCTGTTTTATATGCAACTTATAATATTAAATTGCGTACTTgg       <  1:936716/141‑1 (MQ=255)                                                                                                                                    aTTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCATCCTGTTTTATATGCAACTTATAATATTAAATTGCGTACTTGGCt     <  2:666573/141‑1 (MQ=255)                                                                                                                                      tCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCATCCTGTTTTATATGCAACTTATAATATTAAATTGCGTACTTGGCTCa   <  2:883315/141‑1 (MQ=255)                                                                                                                                       cAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCATCCTGTTTTATATGCAACTTATAATATTAAATTGCGTACTTGGCTCaa  >  1:469475/1‑141 (MQ=255)                                                                                                                                            |                                                                                                                                        AAGTGTTTTATTTTTTTAAAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCATCCTGTTTTATATGCAACTTATAATATTAAATTGCGTACTTGGCTCAA  >  CP000730/1804819‑1805093

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.