| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 1804958 | 26 (0.290) | 11 (0.130) | 4/268 | 12.9 | 21.1% | intergenic (+1930/+395) | cycA/pykA | APC family amino acid‑polyamine‑organocation transporter/pyruvate kinase |
| ? | CP000730 | 1910822 = | 57 (0.650) | intergenic (+355/+1728) | sigS/ytbE | camphor resistance protein/possible aldo/keto reductase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
ACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTCGCGATATGTTAATGAAATTGTTGAAACGATAC > CP000730/1910725‑1910962 | aCAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATa > 1:1016408/1‑141 (MQ=31) cAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATaa > 1:385314/1‑141 (MQ=32) aaTACGTCGTATTGAATGGCTACGCTTTCCGAGGGCGACGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAg > 2:412253/1‑141 (MQ=11) acgaagTATTGTATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGaca > 2:755675/6‑141 (MQ=16) cTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGacac > 1:780492/1‑141 (MQ=33) tCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACtt > 1:400731/1‑141 (MQ=33) cGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACttt < 1:59546/141‑1 (MQ=33) cGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGACACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACttt > 2:469093/1‑141 (MQ=18) tATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGc > 1:124039/1‑141 (MQ=33) tATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCAGTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGc > 1:732341/1‑141 (MQ=18) aTTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGcc < 2:1042863/141‑1 (MQ=33) ttGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGccc > 1:742049/1‑141 (MQ=34) ttGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGccc < 1:819314/141‑1 (MQ=34) gAATGGCTTCGCTTTCCTAGCGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCaa < 1:615854/141‑1 (MQ=25) aaTGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAAc < 2:699349/141‑1 (MQ=37) aaTGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAAc > 2:292721/1‑141 (MQ=37) aTGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACt < 1:805218/141‑1 (MQ=37) cTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTaca > 2:672718/1‑141 (MQ=39) gCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTAc > 1:859510/1‑141 (MQ=40) gCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTAc > 2:324896/1‑141 (MQ=40) gCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTAc > 1:654813/1‑141 (MQ=40) gCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTAc > 1:510800/1‑141 (MQ=40) tCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAAt < 2:711201/141‑1 (MQ=40) cTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAg > 2:768884/1‑141 (MQ=40) cTAGGGTGCCGTCTCAGCCTCGGTCCTCGACTGGCACTGCTCCCTCAGGAGTATCGCACTTAGTACTGCGCATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAg < 1:98496/141‑1 (MQ=14) tAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGa < 2:299222/141‑1 (MQ=40) gTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACAAAATAAAAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAAc < 2:856750/141‑1 (MQ=11) cGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTg < 2:1041436/141‑1 (MQ=255) cGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTg < 2:644043/141‑1 (MQ=255) gTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTACAAAATAAGACACTTTGCCCAAATTACACTACCAAAAGAAACCTCTGt > 1:167166/1‑141 (MQ=255) gTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACCCGACCAATAGAAACCTCTGt > 1:797334/1‑141 (MQ=255) tctcAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACGCTTTGCCCAACTTACACTACCAATAGAAACCTCTGtt < 1:755675/141‑1 (MQ=255) tcAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAg > 2:238811/1‑141 (MQ=255) cAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGa < 1:623531/141‑1 (MQ=255) tCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTcc < 2:411678/141‑1 (MQ=255) tCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTcc > 2:408462/1‑141 (MQ=255) tCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTcc > 1:710431/1‑141 (MQ=255) ttCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCaaaa > 1:689952/1‑141 (MQ=255) ttCGACTGGCACTGCTCCCTCAGGAGGCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCACCTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCaaaa > 2:307650/1‑141 (MQ=255) aCTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGat < 1:358244/141‑1 (MQ=255) aCTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCGCAAAATGat < 1:919808/141‑1 (MQ=255) tGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGatat < 2:733792/141‑1 (MQ=255) aCTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTcg < 2:673400/141‑1 (MQ=255) tGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTcgcg > 2:134006/1‑141 (MQ=255) gCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGAAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTCGCGa > 1:898028/1‑141 (MQ=255) cTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTCGCGat > 2:282273/1‑141 (MQ=255) tCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTCGCGata < 1:561117/141‑1 (MQ=255) cTCAAGAGTCTCGCCATTAATACTACGTATTAAAATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTCGCGATATGt < 2:537639/141‑1 (MQ=255) tCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTa > 2:546715/1‑109 (MQ=255) tCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTa < 1:546715/109‑1 (MQ=255) tCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTCGCGATATGtt > 2:874391/1‑141 (MQ=255) gAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTg < 2:866166/72‑1 (MQ=38) gAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTg > 1:866166/1‑72 (MQ=38) aGTCTCGCCATTAATACTACGTAATTCCATGTTTGGTTACTTTGACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTCGCGATATGTTAATGa > 2:46767/1‑141 (MQ=14) tctcGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTCGCGATATGTTAATGaaa > 1:48615/1‑141 (MQ=255) cGCCATTAATACTACGTATTAACATGTAATTTTACTCTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTCGCGATATGTTAATGAAAttg < 2:998312/141‑1 (MQ=255) tAATACTACGTATTAACACGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTCGCGATATGTTAATGAAATTGTTGaaa > 2:167614/1‑141 (MQ=255) aTACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTCGCGATATGTTAATGAAATTGTTGAAACg > 1:883988/1‑141 (MQ=255) tactacGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTCGCGATATGTTAATGAAATTGTTGAAACGa > 2:647816/1‑141 (MQ=255) tactacGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTCGCGATATGTTAATGAAATTGTTGAAACGa > 2:781057/1‑141 (MQ=255) actacGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTCGCGATATGTTAATGAAATTGTTGAAACGAt > 2:608455/1‑141 (MQ=255) tacGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTCGCGATATGTTAATGAAATTGTTGAAACGATAc > 2:422477/1‑141 (MQ=255) tacGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTCGCGATATGTTAATGAAATTGTTGAAACGATAc < 2:378939/141‑1 (MQ=255) | ACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACT‑TTAAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTCTGTTAGAATTCCTCAAAATGATATTTCGCGATATGTTAATGAAATTGTTGAAACGATAC > CP000730/1910725‑1910962 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |