| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 1205323 | 32 (0.820) | 17 (0.600) +AGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAG |
7/202 | 2.9 | 39.8% | intergenic (+459/‑365) | yfiE/lspA | possible lactoylglutathione lyase/A8 family signal peptidase II |
| ? | CP000730 | 2478252 = | 39 (1.000) | intergenic (+139/+932) | USA300HOU_2340/htrB | hypothetical membrane protein/hemin ABC superfamily ATP binding cassette transporter, ABC protein | |||||
GTAGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATCTTACTACT > CP000730/1205193‑1205463 | gtAGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCcatc > 1:128204/1‑141 (MQ=255) gACGATTCATGTCTTATTTTTTTATTTTTTTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCCAAGACCGAGGCTGAGACGACACCCTAGGAAGGGACCCatcatc > 2:211889/1‑141 (MQ=17) gACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCatcatc > 2:298063/1‑141 (MQ=255) gcGATTCATGTCTTTGTTTTTTAATGTATTTAAAAGTAAAATTAGATGTTAATACGTAGTATGAATGGCGAGACTCCTGAGGGCGTAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCAtcatca < 2:42030/140‑1 (MQ=17) tCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAAt > 1:357376/1‑141 (MQ=255) aTGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTc > 1:178282/1‑141 (MQ=255) tGTCTTATTTTATAAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCt < 1:365172/141‑1 (MQ=255) aTTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCTAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTtat < 1:298063/141‑1 (MQ=255) tttttAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGa > 1:428816/1‑141 (MQ=255) tAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAAttt < 1:442980/141‑1 (MQ=255) attatTTAAAAGGAAAATTACACGTTAATGTGTAGTTTTAATGGCGAGTTTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagag < 2:286651‑M1/139‑39 (MQ=255) gTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACa < 1:84448/141‑1 (MQ=255) aaaaGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAAtg < 1:69076/141‑1 (MQ=255) aaaGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcag > 1:33844‑M1/1‑95 (MQ=255) aaaGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcag > 1:147182‑M1/1‑95 (MQ=255) aaaGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAAtgt > 1:421815/1‑141 (MQ=255) aGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagta < 1:446233‑M1/141‑49 (MQ=255) aGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGc < 1:134995/141‑1 (MQ=255) gTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaa > 2:199786‑M1/1‑92 (MQ=255) tAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaag < 2:344134‑M1/141‑51 (MQ=255) aaaaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaaga > 1:52935‑M1/1‑90 (MQ=255) aaaaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaaga > 2:316962‑M1/1‑90 (MQ=255) aaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagata > 2:183444‑M1/1‑88 (MQ=255) aaTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagata < 2:103939‑M1/141‑54 (MQ=255) tAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGCCCGAGGCTGAGACGGCCCCCTAGGAAGGGACCCATCATCAACAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCg < 2:51171/141‑1 (MQ=255) agttTTAATGGCGAGAGTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGAAAagcgaagccattcaatatgaagtattgtatagatagagaacagcagtaagataattttcaattagaaaata < 2:190461‑M1/141‑72 (MQ=255) gtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagataattttcaattagaaaatat < 1:217325‑M1/141‑73 (MQ=255) taTTAATGGCGAGACTCCTGCGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagataattttcaattagaaaatatc < 2:350702‑M1/141‑74 (MQ=255) aTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCaa < 1:256260/141‑1 (MQ=255) aTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACg > 2:143428/1‑141 (MQ=255) tGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatgattttcaattagaaaatatcttgctg < 2:383211‑M1/141‑80 (MQ=255) ggCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATActtc < 2:72505/141‑4 (MQ=255) ggCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGaa < 1:124675/141‑1 (MQ=255) cTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGt < 1:70440/141‑1 (MQ=255) cTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGt < 1:73513/141‑1 (MQ=255) cTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGt > 2:321013/1‑141 (MQ=255) ccTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagataattttcaattagaaaatatctta > 2:274654‑M1/1‑52 (MQ=255) ccTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagataattttcaattagaaaatatctta < 1:274654‑M1/128‑77 (MQ=255) gAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATaaa > 1:447636/1‑141 (MQ=255) aGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATagag > 2:247828/1‑141 (MQ=255) cAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGaa < 1:34896/141‑1 (MQ=255) tGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAAcag > 2:115276/1‑141 (MQ=255) ccAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTACTGTGCAAGATGGGCTTCGAGCCGAACTTCAATAAGCAGTATTGTATAAATAGAGAAcagca > 1:380231/1‑141 (MQ=14) ccGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAAtt > 2:79524/1‑141 (MQ=38) aCGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatgattttcaattagaaaatatc > 2:242168‑M1/1‑15 (MQ=255) aCGGCACCCTAGGAAagcgaagccattcaatacgaagtattgtataaatagagaacagcagtaagatgattttcaattagaaaatatc < 1:242168‑M1/88‑74 (MQ=255) aCGGCACACTAGGAATGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGaa < 2:299295/141‑1 (MQ=255) cccTAGGAAGGGACCCATCATCAAAAATTCTATTCATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCCATACGAAGTATTGTATAAATAGAGAACAGCAGT‑AGATAATTGTTAATTAGAAAATAGCt > 1:359964/1‑141 (MQ=14) cTAGGAAagcgaagccattcaatacgaagtattgt > 2:359780‑M1/1‑7 (MQ=255) cTAGGAAagcgaagccattcaatacgaagtattgt < 1:359780‑M1/35‑29 (MQ=255) aaGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATCTtactac < 1:143428/141‑1 (MQ=255) aGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATCTTactact > 1:285768/1‑141 (MQ=255) | GTAGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATCTTACTACT > CP000730/1205193‑1205463 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |