New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2497335	47 (1.210)	3 (0.080)	3/258	5.8	6.3%	coding (385/945 nt)	corA	MIT family metal ion transporter CorA
	?	CP000730	= 2497352	45 (1.250)					coding (402/945 nt)	corA	MIT family metal ion transporter CorA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAACTAATCGTAGCGTTCTATCTTTTGTAACGATTCCATTAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACTAACAAACAACTTTTCAAATTAAT  >  CP000730/2497198‑2497474                                                                                                                                          |                                                                                                                                            cgaCTGATCGTAGCGTTCTATCTTTTGTAACGATTCCATTAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTcaca                                                                                                                                          <  2:380593/139‑1 (MQ=255)   aCTAATCGTGGCGTTCTATTTTTTGTAACGATTCCATTAGGCATGATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTGCAcagc                                                                                                                                        <  2:261704/141‑1 (MQ=255)   aCTAATCGTAGCGTTCTATCTTTTGTAACGATTCCATTAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCAcagc                                                                                                                                        <  1:436613/141‑1 (MQ=255)     tAATCGTAGCGTTCTATCTTTTGTAACGATTCCATTAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCAcagcag                                                                                                                                      <  2:301832/141‑1 (MQ=255)      aaTCGTAGCGTTCTATCTTTTGTAACGATTCCATTAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGa                                                                                                                                     <  1:20195/141‑1 (MQ=255)         cGTAGCGTTCTATCTTTTGTAACGATTCCATTAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTctaatgcaaatc                                                                                                                                  <  2:305937/141‑12 (MQ=255)                ttCTATCTTTTGTAACGATTCCATTAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAg                                                                                                                           <  1:256735/141‑1 (MQ=255)                             aaCGATTCCATTAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAactac                                                                                                              >  1:87957/1‑141 (MQ=255)                             aaCGATTCCATTAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAactac                                                                                                              <  2:119951/141‑1 (MQ=255)                              aCGATTCCATTAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAactact                                                                                                             >  2:423690/1‑141 (MQ=255)                              aCGATTCCATTAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAactact                                                                                                             >  2:205509/1‑141 (MQ=255)                                 aTTCCATTAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTAtt                                                                                                          >  2:406529/1‑141 (MQ=255)                                 aTTCCATTAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTAtt                                                                                                          >  1:252046/1‑141 (MQ=255)                                  ttCCATTAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTg                                                                                                         <  1:235772/141‑1 (MQ=255)                                  ttCCATTAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTg                                                                                                         <  1:144576/141‑1 (MQ=255)                                          ggCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCAt                                                                                                 >  2:3373/1‑141 (MQ=255)                                           gCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCAtt                                                                                                                             <  1:167171/112‑1 (MQ=255)                                           gCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCAtt                                                                                                                             >  2:167171/1‑112 (MQ=255)                                              ttattattGGCAACGGTATTATCGTAACTGGTGGTGACGCTGAAAATGCATTTTTAGAAAAGTAAGCGAAGCGGCAGATTAATTTAAAATGTCACATCAGATGTGCACTAGAAATTGTAACTACTATTCCCGAAAATtatc                                                                                             >  2:223640/1‑140 (MQ=255)                                               tattattGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATaa                                                                                            <  2:45952/141‑1 (MQ=255)                                                    ttGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTa                                                                                       <  1:90777/141‑1 (MQ=255)                                                    ttGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTa                                                                                       <  1:278515/141‑1 (MQ=255)                                                           cGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACg                                                                                <  1:363966/141‑1 (MQ=255)                                                               attatCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTa                                                                            >  1:400044/1‑141 (MQ=255)                                                                ttatCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTAc                                                                           >  1:316833/1‑141 (MQ=255)                                                                ttatCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTAc                                                                           >  1:134542/1‑141 (MQ=255)                                                                 tatCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACt                                                                          >  2:136931/1‑141 (MQ=255)                                                                   tCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTta                                                                        <  1:250384/141‑1 (MQ=255)                                                                   tCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTta                                                                        <  1:116323/141‑1 (MQ=255)                                                                              tgtgACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGa                                                             <  2:438468/141‑1 (MQ=255)                                                                              tgtgACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGa                                                             <  2:22261/141‑1 (MQ=255)                                                                              tgtgACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGa                                                             >  1:429213/1‑141 (MQ=255)                                                                                tgACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAAt                                                           >  2:65492/1‑141 (MQ=255)                                                                                   cGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCg                                                        >  2:227106/1‑141 (MQ=255)                                                                                        aaaaTGAATTTTTAGAATTTTTACTTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTg                                                   >  2:9325/1‑141 (MQ=255)                                                                                                   ttAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTa                                        >  1:144083/1‑141 (MQ=255)                                                                                                   ttAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTa                                        >  1:144190/1‑141 (MQ=255)                                                                                                    tAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTaa                                       >  2:156463/1‑141 (MQ=255)                                                                                                         aaTTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAAt                                  >  2:80346/1‑141 (MQ=255)                                                                                                               ccTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGATTTCGTATTGAGAAAGAACTAAAAAATAACAtt                            >  2:296514/1‑141 (MQ=255)                                                                                                               ccTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAGAAATAACAtt                            >  1:100009/1‑141 (MQ=255)                                                                                                                cTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTa                           >  2:395376/1‑141 (MQ=255)                                                                                                                              cgtcgattttatCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACTAACAAACAACtt             <  1:130656/130‑1 (MQ=255)                                                                                                                               aTTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACTAACAAACAACttt            <  1:97370/141‑1 (MQ=255)                                                                                                                                 ttAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACTAACAAACAACTTTTc          <  1:9325/141‑1 (MQ=255)                                                                                                                                  tAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACTAACAAACAACTTTTCa         >  1:274776/1‑141 (MQ=255)                                                                                                                                       tttCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACTAACAAACAACTTTTCAAATTa    >  2:66423/1‑141 (MQ=255)                                                                                                                                         tCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACTAACAAACAACTTTTCAAATTAAt  >  1:181051/1‑141 (MQ=255)                                                                                                                                          |                                                                                                                                            CAACTAATCGTAGCGTTCTATCTTTTGTAACGATTCCATTAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACTAACAAACAACTTTTCAAATTAAT  >  CP000730/2497198‑2497474

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.