New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2497335	47 (1.210)	3 (0.080)	3/258	5.8	6.3%	coding (385/945 nt)	corA	MIT family metal ion transporter CorA
	?	CP000730	= 2497352	45 (1.250)					coding (402/945 nt)	corA	MIT family metal ion transporter CorA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTCTATCTTTTGTAACGATTCCATTAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACTAACAAACAACTTTTCAAATTAATGGAAGTTGAAAAA  >  CP000730/2497213‑2497487                                                                                                                                            |                                                                                                                                        ttCTATCTTTTGTAACGATTCCATTAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAg                                                                                                                                        <  1:256735/141‑1 (MQ=255)              aaCGATTCCATTAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAactac                                                                                                                           <  2:119951/141‑1 (MQ=255)              aaCGATTCCATTAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAactac                                                                                                                           >  1:87957/1‑141 (MQ=255)               aCGATTCCATTAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAactact                                                                                                                          >  2:205509/1‑141 (MQ=255)               aCGATTCCATTAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAactact                                                                                                                          >  2:423690/1‑141 (MQ=255)                  aTTCCATTAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTAtt                                                                                                                       >  2:406529/1‑141 (MQ=255)                  aTTCCATTAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTAtt                                                                                                                       >  1:252046/1‑141 (MQ=255)                   ttCCATTAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTg                                                                                                                      <  1:144576/141‑1 (MQ=255)                   ttCCATTAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTg                                                                                                                      <  1:235772/141‑1 (MQ=255)                           ggCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCAt                                                                                                              >  2:3373/1‑141 (MQ=255)                               ttattattGGCAACGGTATTATCGTAACTGGTGGTGACGCTGAAAATGCATTTTTAGAAAAGTAAGCGAAGCGGCAGATTAATTTAAAATGTCACATCAGATGTGCACTAGAAATTGTAACTACTATTCCCGAAAATtatc                                                                                                          >  2:223640/1‑140 (MQ=255)                                tattattGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATaa                                                                                                         <  2:45952/141‑1 (MQ=255)                                     ttGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTa                                                                                                    <  1:90777/141‑1 (MQ=255)                                     ttGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTa                                                                                                    <  1:278515/141‑1 (MQ=255)                                            cGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACg                                                                                             <  1:363966/141‑1 (MQ=255)                                                attatCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTa                                                                                         >  1:400044/1‑141 (MQ=255)                                                 ttatCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTAc                                                                                        >  1:316833/1‑141 (MQ=255)                                                 ttatCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTAc                                                                                        >  1:134542/1‑141 (MQ=255)                                                  tatCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACt                                                                                       >  2:136931/1‑141 (MQ=255)                                                    tCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTta                                                                                     <  1:116323/141‑1 (MQ=255)                                                    tCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTta                                                                                     <  1:250384/141‑1 (MQ=255)                                                               tgtgACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGa                                                                          <  2:22261/141‑1 (MQ=255)                                                               tgtgACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGa                                                                          >  1:429213/1‑141 (MQ=255)                                                               tgtgACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGa                                                                          <  2:438468/141‑1 (MQ=255)                                                                 tgACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAAt                                                                        >  2:65492/1‑141 (MQ=255)                                                                    cGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCg                                                                     >  2:227106/1‑141 (MQ=255)                                                                         aaaaTGAATTTTTAGAATTTTTACTTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTg                                                                >  2:9325/1‑141 (MQ=255)                                                                                    ttAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTa                                                     >  1:144190/1‑141 (MQ=255)                                                                                    ttAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTa                                                     >  1:144083/1‑141 (MQ=255)                                                                                     tAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTaa                                                    >  2:156463/1‑141 (MQ=255)                                                                                          aaTTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAAt                                               >  2:80346/1‑141 (MQ=255)                                                                                                ccTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGATTTCGTATTGAGAAAGAACTAAAAAATAACAtt                                         >  2:296514/1‑141 (MQ=255)                                                                                                ccTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAGAAATAACAtt                                         >  1:100009/1‑141 (MQ=255)                                                                                                 cTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTa                                        >  2:395376/1‑141 (MQ=255)                                                                                                               cgtcgattttatCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACTAACAAACAACtt                          <  1:130656/130‑1 (MQ=255)                                                                                                                aTTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACTAACAAACAACttt                         <  1:97370/141‑1 (MQ=255)                                                                                                                  ttAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACTAACAAACAACTTTTc                       <  1:9325/141‑1 (MQ=255)                                                                                                                   tAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACTAACAAACAACTTTTCa                      >  1:274776/1‑141 (MQ=255)                                                                                                                        tttCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACTAACAAACAACTTTTCAAATTa                 >  2:66423/1‑141 (MQ=255)                                                                                                                          tCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACTAACAAACAACTTTTCAAATTAAt               >  1:181051/1‑141 (MQ=255)                                                                                                                            acaGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACTAACAAACAACTTTTCAAATTAATgg             <  1:80346/141‑1 (MQ=255)                                                                                                                               gcagATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAAAAATAAAAAATAACATTACTAACAAACAACTTTTCAAATTAATGGAAg          <  2:179603/141‑1 (MQ=255)                                                                                                                                  gATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACTAACAAACAACTTTTCAAATTAATGGAAGTTg       <  1:136931/141‑1 (MQ=255)                                                                                                                                  gATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACTAACAAACAACTTTTCAAATTAATGGAAGTTg       >  2:373726/1‑141 (MQ=255)                                                                                                                                  aaattGAATTAGAAATTTTAACTACTATAGCCGAACATTATAATCATAAATTACGATTACTTAATAAAAGTAGAATTCGTAATAAAAAAAAAAAAAAAAATAACATTACTAACAAACAACTTTTCAAATTAATGGAAGTTg       <  2:396274/138‑1 (MQ=255)                                                                                                                                       gCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTTGTATTGAGAAAGAACTAAAAAATAACATTACTAACAAACAACTTTTCAAATTAATGGAAGTTGaaaaa  <  2:429213/141‑1 (MQ=255)                                                                                                                                            |                                                                                                                                        TTCTATCTTTTGTAACGATTCCATTAGGCATTATTATTGGCAACGGTATTATCGTAACAGTTTGTGACGCTGAAAATGAATTTTTAGAAAATTTACCTAAGCGTGATATTAATTTAAAATTTCACAGCAGATTTGCATTAGAAATTTTAACTACTATTGCCGACCATTATAATCGTAACTTACGATTACTTAATAAAAGTAGAATTCGTATTGAGAAAGAACTAAAAAATAACATTACTAACAAACAACTTTTCAAATTAATGGAAGTTGAAAAA  >  CP000730/2497213‑2497487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.