| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 450716 | 10 (0.260) | 30 (0.880) | 29/244 | 0.3 | 78.2% | intergenic (+83/‑266) | set19/set20 | staphylococcal exotoxin/staphylococcal exotoxin |
| ? | CP000730 | 451778 = | 8 (0.230) | intergenic (+77/‑369) | set20/set21 | staphylococcal exotoxin/staphylococcal exotoxin | |||||
ATGGCAGATGTCATAGATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAATTTATCTGTAAATCCCTATCTATCGGGTGTGAAGCACAACGGGATCAGTTTTATTTAACGAACATTATAGA > CP000730/450577‑450854 | aTGGCAGATGTCATAGATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTt > 2:107390‑M1/1‑140 (MQ=255) gCAGATGTCATAGATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCAGCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgt < 2:131295‑M1/141‑5 (MQ=255) cAGATGTCATAGATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtg < 1:432878‑M1/141‑6 (MQ=255) aTGTCATAGATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGtt > 1:341769/1‑141 (MQ=255) gTCATAGATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttgga > 1:447515‑M1/1‑131 (MQ=255) aCTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgtttgagagatgaaaatg > 2:416690‑M1/1‑119 (MQ=255) ttGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAAt < 2:334890/141‑1 (MQ=255) gATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatc > 2:281331‑M1/1‑110 (MQ=255) aCATTGAAGTAAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatg < 2:441985‑M1/141‑36 (MQ=255) aTTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaa < 1:431938‑M1/141‑38 (MQ=255) ttGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaat < 1:226955‑M1/141‑39 (MQ=255) gTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCa > 1:277943/1‑141 (MQ=255) tGAATATAAAATAACCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGACTACATGTTGATTCGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCaa < 1:200506/141‑1 (MQ=255) aataatCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaat < 2:207401‑M1/141‑54 (MQ=255) ataatCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaata > 2:99888‑M1/1‑87 (MQ=255) atCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaa > 1:194102‑M1/1‑84 (MQ=255) ctctAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAAt > 1:449508/1‑141 (MQ=255) ctAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatag > 2:63864‑M1/1‑71 (MQ=255) aTAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttga < 2:25482‑M1/141‑75 (MQ=255) gAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAATTTATCTGTa < 2:186758/141‑1 (MQ=255) gCTGTCATCGGAAACACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcggatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatactta > 1:253817‑M1/1‑61 (MQ=255) gCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGACCTACATGTTGCTTAGCTTCTTTTttgttgttgagagatgaaaatgaagcgtatcgatgaataataaaaacgccaataaaacttgtggaaatagttgatactta > 1:109842‑M1/1‑61 (MQ=255) cTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttgt > 1:32656‑M1/1‑60 (MQ=255) gTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatag < 1:107390‑M1/141‑84 (MQ=255) aTCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcg < 2:256113‑M1/141‑87 (MQ=255) ggAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAATTTATCTGTAAATCCctatcta < 2:88772/141‑1 (MQ=255) aaaaaCAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgt < 1:291820‑M1/141‑92 (MQ=255) aaaCAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttg < 1:399480‑M1/141‑94 (MQ=255) aaCAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgt > 1:137709‑M1/1‑47 (MQ=255) aCAAGAAGTTAAGTGACAACGGCCTACCTGTTGCTTAGCTCCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtc > 2:40307‑M1/1‑46 (MQ=255) agaagTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtcctt > 2:72803‑M1/1‑43 (MQ=255) gaagTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgtttgagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttt > 2:80222‑M1/1‑42 (MQ=255) gaagTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttt < 2:192268‑M1/141‑100 (MQ=255) ttAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAATTTATCTGTAAATCCCTATCTATCGGGTGTGAAGca < 2:222525/141‑1 (MQ=255) ttAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAATTTATCTGTAAATCCCTATCTATCGGGTGTGAAGca < 2:222344/141‑1 (MQ=255) ttAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAATTTATCTGTAAATCCCTATCTATCGGGTGTGAAGca < 2:397983/141‑1 (MQ=255) tAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtg < 1:185246‑M1/141‑105 (MQ=255) gTGACAACGGCCTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgaca > 2:416378‑M1/1‑34 (MQ=255) ccTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttataatcgcgcgatgtccttttcgtgacatgacacaatg > 2:344968‑M1/1‑24 (MQ=255) cTACATGTTGCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgatacaatgt > 1:406655‑M1/1‑23 (MQ=255) gCTTAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgaaacaatgtggaaaaaat > 2:323495‑M1/1‑14 (MQ=255) ttAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatattcgcgcgttgtccttttcgtgacatgaaacaatgtggaaaacatag > 1:357512‑M1/1‑12 (MQ=255) ttAGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgaaacaatgtggaaaacatag < 1:99888‑M1/141‑130 (MQ=255) aGCTTCTTTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgaaacaatgtggaaaacatagtt > 2:154296‑M1/1‑10 (MQ=255) cttTTttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgaaacaatgtggaaaacatagtcaaatt > 2:366692‑M1/1‑5 (MQ=255) ttttttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgaaacaatgtggaaaacatagttaaattg > 2:122667‑M1/1‑4 (MQ=255) tttttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgaaacaatgtggaaaacatagttaaattga > 1:123088‑M1/1‑3 (MQ=255) tttttgtgttggagagatgaaaatgaagcgtatcgatgaataataaaaacaccaataaaacttgtggaaatagttgatacttatagtcgcgcgttgtccttttcgtgacatgaaacaatgtggaaaacatagttaaattga > 2:169619‑M1/1‑3 (MQ=255) | ATGGCAGATGTCATAGATGGCACTAATATTGATAACATTGAAGTGAATATAAAATAATCATGACATTCTCTAAATAGAAGCTGTCATCGGAAAAACAAGAAGTTAAGTGACAACGGCCTACATGTTGCTTAGCTTCTTTTGTTATGTTCGATGATTTGAGAACCCGAATTTTCGATGGGTCCAAATATGACGTGGAAGAGACCTGAATTTATCTGTAAATCCCTATCTATCGGGTGTGAAGCACAACGGGATCAGTTTTATTTAACGAACATTATAGA > CP000730/450577‑450854 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |