| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 450716 | 10 (0.260) | 30 (0.880) | 29/244 | 0.3 | 78.2% | intergenic (+83/‑266) | set19/set20 | staphylococcal exotoxin/staphylococcal exotoxin |
| ? | CP000730 | 451778 = | 8 (0.230) | intergenic (+77/‑369) | set20/set21 | staphylococcal exotoxin/staphylococcal exotoxin | |||||
AAATCGCATGAGTGACGTCATTGACGGTAGAAATATTGAAAAAATAGAAGCCAACATTAGATAATTCAATGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAGTTAAATTGAGGG > CP000730/451638‑451918 | atggcagatgtcatagatggcactaatattgataacattgaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttt > 2:107390‑M2/141‑141 (MQ=255) gcagatgtcatagatggcactaatattgataacattgaagtgaatataaaataatcatgacattctctaaatagaagctgtcagcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTtgt < 2:131295‑M2/4‑1 (MQ=255) cagatgtcatagatggcactaatattgataacattgaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTtgtg < 1:432878‑M2/5‑1 (MQ=255) gtcatagatggcactaatattgataacattgaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGga > 1:447515‑M2/132‑141 (MQ=255) actaatattgataacattgaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTTGAGAGATGAAAATg > 2:416690‑M2/120‑141 (MQ=255) cGGTAGAAATATTGAAAAAATAGAAGCCAACATTAGATAATTCAATGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAg < 1:131982/141‑1 (MQ=255) gataacattgaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATc > 2:281331‑M2/111‑141 (MQ=255) atatTGAAAAAATAGAAGCCAACATTAGATAATTCAATGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGa > 1:16290/1‑141 (MQ=255) acattgaagtaaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATg < 2:441985‑M2/35‑1 (MQ=255) attgaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGaa < 1:431938‑M2/37‑1 (MQ=255) ttgaagtgaatataaaataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGaat < 1:226955‑M2/38‑1 (MQ=255) aaaaaTAGAAGCCAACATTAGATAATTCAATGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGaataa < 2:14625/141‑1 (MQ=255) cAACATTAGATAATTCAATGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCaa < 1:195128/141‑1 (MQ=255) aataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAAt < 2:207401‑M2/53‑1 (MQ=255) ataatcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATa > 2:99888‑M2/88‑141 (MQ=255) atcatgacattctctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATaaaa > 1:194102‑M2/85‑141 (MQ=255) aTGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTCTTTGTGTTGCAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATa < 2:85891/141‑1 (MQ=255) ctaaatagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAg > 2:63864‑M2/72‑141 (MQ=255) atagaagctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGa < 2:25482‑M2/74‑1 (MQ=255) gctgtcatcggaaacacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGGATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTta > 1:253817‑M2/62‑141 (MQ=255) gctgtcatcggaaaaacaagaagttaagtgacaacgacctacatgttgcttagcttcttttTTGTTGTTGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACGCCAATAAAACTTGTGGAAATAGTTGATACTta > 1:109842‑M2/62‑141 (MQ=255) ctgtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATacttgt > 1:32656‑M2/61‑139 (MQ=255) gtcatcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAg < 1:107390‑M2/83‑1 (MQ=255) atcggaaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTcg < 2:256113‑M2/86‑1 (MQ=255) aaaaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGt < 1:291820‑M2/91‑1 (MQ=255) aaacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTg < 1:399480‑M2/93‑1 (MQ=255) aacaagaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGt > 1:137709‑M2/48‑141 (MQ=255) acaagaagttaagtgacaacggcctacctgttgcttagctccttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTc > 2:40307‑M2/47‑141 (MQ=255) tAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCtt < 1:120305/141‑1 (MQ=255) agaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCtt > 2:72803‑M2/44‑141 (MQ=255) gaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTTGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCttt > 2:80222‑M2/43‑141 (MQ=255) gaagttaagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCttt < 2:192268‑M2/99‑1 (MQ=255) taagtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTg < 1:185246‑M2/104‑1 (MQ=255) gtgacaacggcctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACa > 2:416378‑M2/35‑141 (MQ=255) cctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAATCGCGCGATGTCCTTTTCGTGACATGACACAAtg > 2:344968‑M2/25‑141 (MQ=255) ctacatgttgcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGATACAAtgt > 1:406655‑M2/24‑141 (MQ=255) cATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAAtgtg > 2:216494/1‑141 (MQ=255) aGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGaaa > 1:8242/1‑141 (MQ=255) gcttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAAAAt > 2:323495‑M2/15‑141 (MQ=255) ttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATATTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAg > 1:357512‑M2/13‑141 (MQ=255) ttagcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAg < 1:99888‑M2/129‑1 (MQ=255) agcttcttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAGtt > 2:154296‑M2/11‑141 (MQ=255) cttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAGTCAAAtt > 2:366692‑M2/6‑141 (MQ=255) ttttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAGTTAAATTg > 2:122667‑M2/5‑141 (MQ=255) tttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAGTTAAATTGa > 1:123088‑M2/4‑141 (MQ=255) tttTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAGTTAAATTGa > 2:169619‑M2/4‑141 (MQ=255) ttGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAGCTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAGTTAAATTGAggg < 2:324669/141‑1 (MQ=255) | AAATCGCATGAGTGACGTCATTGACGGTAGAAATATTGAAAAAATAGAAGCCAACATTAGATAATTCAATGAAATATGGATAATAGTAAAATATGGATAGTATAGAGGAGTTAGGCAACATAAGTTGCTTAGCTTCTTTTTTGTGTTGGAGAGATGAAAATGAAGCGTATCGATGAATAATAAAAACACCAATAAAACTTGTGGAAATAGTTGATACTTATAGTCGCGCGTTGTCCTTTTCGTGACATGAAACAATGTGGAAAACATAGTTAAATTGAGGG > CP000730/451638‑451918 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |