New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1682523	88 (1.120)	7 (0.100)	7/256	9.8	7.8%	intergenic (‑268/+36)	phoH/USA300HOU_1573	phosphate starvation‑inducible protein PhoH/hypothetical protein
	?	CP000730	= 1682539	85 (1.170)					intergenic (‑284/+20)	phoH/USA300HOU_1573	phosphate starvation‑inducible protein PhoH/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAATTTAAAATAATCATTTATACTTTTCACCTTGTCATAAAAGCAGATTCAATTTTAGACTAATCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1682374‑1682523 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaacaagcaCTATCGTAATGGTAGTTGCTTGTTTTTTTACGTTAAGAAAAATTAAAAAACAAAGAGAATTTTTCGAGAAATATTAGTTATTTAAATTACAGCAAAAAATTGATTAGTCTAAAATTGAATCTGCTTTTATGACAAGG  <  CP000730/1682539‑1682403                                                                                                                                                                                                                                                                                                 TAATTTAAAATAATCATTTATACTTTTCACCTTGTCATAAAAGCAGATTCAATTTTAGACTAATCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAA                                                                                                                                                    >  2:100876/1‑141  tATTTAAAATAATCATTTATACTTTTCACCTTGTCATAAAAGCAGATTCAATTTTAGACTAATCAATTTTTTTCTTTTTTTTTAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTATCGTAAAAA                                                                                                                                                   >  2:250510/2‑141         AATAATCATTTATACTTTTCACCTTGTCATAAAAGCAGATTCAATTTTAGACTAATCAATTTTTTTCTTTTTTTTAAATAACTAATATTTCTCGAAAATTTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACATGC                                                                                                                                            >  2:176436/1‑141                      ACTTTTCACCTTGTCATAAAAGCAGATTCAATTTTAGACTAATCGATTTTTTGCTGTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAAGTTTTCTTAACGTAAAAAAACAAGCACTATCGTAATGG                                                                                                                               <  1:753099/141‑1                         TTTCGCCTTGTCATAAAAGCAGATTCAATTTTAGACTAATCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCACTATCGTAATGGTAG                                                                                                                            <  1:825466/141‑1                                 TGTCATAAAAGCAGATTCAATTTTAGACTAATCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCACTATCGTAATGGTAGTTGCTTGT                                                                                                                    >  2:268721/1‑141                                     ATAAAAGCAGATTCAATTTTAGACTAATCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCACTATCGTAATGGTAGTTGCTTGTTTTT                                                                                                                <  2:426241/141‑1                                             AGATTCAATTTTAGACTAATCAATTTTTTGCTGTTATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCACTATCGTAATGGTAGTTGCTTGTTTTTTTACGTTA                                                                                                        <  1:845346/141‑1                                                                                             ATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCACTATCGTAATGGTAGTTGCTTGTTTTTTTACGTTAAGAAAAATTAAAAAACAAAGAGAATTTTTCGAGAAATATTAGTTATTT                                                        <  1:268721/141‑1                                                                                                      GAAAATTTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCACTATAGTAATGGTAGTTGCTTGTTTTTTTACGTTAAGAAAAATTAAAAAACAAAGAGAATTTTTCGAGAAATATTAGTTATTTAAATTACAG                                               <  1:813639/141‑1                                                                                                                                               AACAAGCACTATCGTAATGGTAGTTGCTTGTTTTTTTACGTTAAGAAAAATTAAAAAACAAAGAGAATTTTTCGAGAAATATTAGTTATTTAAATTACAGCAAAAAATTGATTAGTCTAAAATTGAATCTGCTTTTATGAC      <  2:771970/141‑1                                                                                                                                               AACAAGCACTATCGTAATGGTAGTTGCTTGTTTTTTTACGTTAAGAAAAATTAAAAAACAAAGAGAATTTTTCGAGAAATATTAGTTATTTAAATTACAGCAAAAAATTGATTAGTCTAAAATTGAATCTGCTTTTATGAC      <  2:309609/141‑1                                                                                                                                               AACAAGCACTATCGTAATGGTAGTTGCTTGTTTTTTTACGTTAAAAAAAAAAAAAAAACAAAGAGAATTTTTCGAGAAATATTAGTTATTTAAATTACAGCAAAAAATTGATTAGTCTAAAATTGAATCTGCTTTTATGAC      <  2:753295/141‑1                                                                                                                                               AACAAGCACTATCGTAATGGTAGTTGCTTGTTCTTTTACGTTAAGAAAAATTAAAAAACAAAGAGAATTTTTCGAGAAATATTAGTTATTTAAATTACAGCAAAAAATTGATTAGTCTAAAATTGAATCTGCTTTTATGAC      <  2:710153/141‑1                                                                                                                                                ACAAGCACTATCGTAATGGTAGTTGCTTGTTCATTAATGATAGGAAAAATCAAAAAACAAAGAGATTTTTTCTATAAATATTAGTTATTTAAATTACAGCAAAAAATTGATTAGTCTAAAAGTGAATCTGCTTTTATGACA     <  1:818306/141‑1                                                                                                                                                ACAAGCAATATCGTAATGGTAGTTGCTTGTTTTTTTACGTTAAGAAAAATTAAAAAACAAAGAGAATTTTTCGAGAAATATTAGTTATTTAAAATAAAAAAAAAAATTGATTAGTCTAAAATTGAATCTGCTTTTATGACA     <  2:215877/141‑1                                                                                                                                                   AGCACTATCGTAATGGTAGTTGCTTGTTTTTTTACGTTAAGAAAAATTAAAAAACAAAGAGAATTTTTCGAGAAATATTAGTTATTTAAATTACAGCAAAAAATTGATTAGTCTAAAATTGAATCTGCTTTTATGACAAGG  >  1:909225/1‑141                                                                                                                                                                                                                                                                                                 TAATTTAAAATAATCATTTATACTTTTCACCTTGTCATAAAAGCAGATTCAATTTTAGACTAATCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCGAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1682374‑1682523 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaacaagcaCTATCGTAATGGTAGTTGCTTGTTTTTTTACGTTAAGAAAAATTAAAAAACAAAGAGAATTTTTCGAGAAATATTAGTTATTTAAATTACAGCAAAAAATTGATTAGTCTAAAATTGAATCTGCTTTTATGACAAGG  <  CP000730/1682539‑1682403

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.