New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1682523	88 (1.120)	7 (0.100)	7/256	9.8	7.8%	intergenic (‑268/+36)	phoH/USA300HOU_1573	phosphate starvation‑inducible protein PhoH/hypothetical protein
	?	CP000730	= 1682539	85 (1.170)					intergenic (‑284/+20)	phoH/USA300HOU_1573	phosphate starvation‑inducible protein PhoH/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCTTGTCATAAAAGCAGATTCAATTTTAGACTAATCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGATTTAGTCAAATCTTTTTCGACATTTTGAGAATTAAGCAGC  >  CP000730/1682403‑1682679                                                                                                                                          |                                                                                                                                              ccTTGTCATAAAAGCAGATTCAATTTTAGACTAATCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCt                                                                                                                                           <  1:909225/141‑1 (MQ=255)  ctgaacATAAAATCAGAGTCAAACTTACACTAATCAATTTTTTGCTGTAATTTAAATAACTAAAAAAAAAAA‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCtt                                                                                                                                          <  2:818368/136‑1 (MQ=255)    tGTCATAAAAGCAGATTCACTTTTAGACTAATCAATTTTTTGCTGTAATTTAAATAACTAATATTTATAG‑AAAAAATCTCTTTGTTTTTTGATTTTTCCTATCATTAATGAACAAGCAACTACCATTACGATAGTGCTTGt                                                                                                                                        >  1:818306/1‑141 (MQ=255)    tGTCATAAAAGCAGATTCAATTTTAGACTAATCAATTTTTTTTTTTATTTTAAATAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATATTGCTTGt                                                                                                                                        >  2:215877/1‑141 (MQ=255)     gTCATAAAAGCAGATTCAATTTTAGACTAATCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTTTTTTTTTTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGtt                                                                                                                                       >  2:753295/1‑141 (MQ=255)     gTCATAAAAGCAGATTCAATTTTAGACTAATCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAGAACAAGCAACTACCATTACGATAGTGCTTGtt                                                                                                                                       >  2:710153/1‑141 (MQ=255)     gTCATAAAAGCAGATTCAATTTTAGACTAATCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGtt                                                                                                                                       >  2:309609/1‑141 (MQ=255)     gTCATAAAAGCAGATTCAATTTTAGACTAATCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGtt                                                                                                                                       >  2:771970/1‑141 (MQ=255)          aaaaGCAGATTCAATTTTAGACTAATCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCaa                                                                                                                                  <  2:212548/141‑1 (MQ=255)          aaaaGCAGATTCAATTTTAGACTAATCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCaa                                                                                                                                  >  1:58282/1‑141 (MQ=255)           aaaGCAGATTCAATTTTAGACTAATCAATTTTTTTCTTTAATTTAAATAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCaaa                                                                                                                                 >  2:865522/1‑141 (MQ=255)           aaaGCAGATTCAATTTTAGACTAATCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCaaa                                                                                                                                 <  1:626204/141‑1 (MQ=255)            aaGCAGATTCAATTTTAGACTAATCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAACCAAGCAACTACCATTACGATAGTGCTTGTTTTCaaaa                                                                                                                                >  2:452145/1‑141 (MQ=255)             aGCAGATTCAATTTTAGACTAATCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCG‑AAAAATTCTCTTTGTGTTGTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCaaaaa                                                                                                                               <  2:364859/141‑1 (MQ=255)               cAGATTCAATTTTAGACTAATCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑t                                                                                                                            <  1:601363/141‑1 (MQ=255)                   ttCAATTTTAGACTAATCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTta                                                                                                                        <  1:600611/141‑1 (MQ=255)                     cAATTTTAGACTAATCAATTTTTTTTTTTTTTTTTAATAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAATTACCAAGCAACTACCATTACGATATTGCTTGTTTTCAAAAAA‑ttttttt                                                                                                                      >  2:453948/1‑138 (MQ=255)                         tttAGACTAATCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAAttt                                                                                                                  >  2:875111/1‑140 (MQ=255)                          ttAGACTAATCAATTTTTTGCTGTAATTTAAATAACTAATATTTTTCG‑AAAAATTCTCTTTGTTTTTTAATTTATAATAAAGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGt                                                                                                                 <  2:145952/141‑1 (MQ=255)                            aGACTAATCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGttt                                                                                                               <  1:152191/141‑1 (MQ=255)                             gACTAATCCATCTTGTGCTGTGATTGATATAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGtttt                                                                                                              <  1:265116/141‑1 (MQ=255)                                  aTCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTAG‑AAAAATTCTCTTTGTTTTTTAATATTTCTTAACTTAAACACACAAGCATCTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGttt                                                                                                         >  2:280876/1‑141 (MQ=255)                                       ttttttGCTGTAATTTAAATAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTa                                                                                                    >  1:803959/1‑141 (MQ=255)                                        tttttGCTGTAATTTAAATAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAGAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTaa                                                                                                   <  1:710153/141‑1 (MQ=255)                                        tttttGCTGTAATTTAAATAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTaa                                                                                                   <  2:846773/141‑1 (MQ=255)                                         ttttGCTGTAATTTAAATAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTaaa                                                                                                  <  1:764745/141‑1 (MQ=255)                                          tttGCTGTAATTTAAATAACTAATATTTCTCG‑AAAAATTATCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTGTTGGTTTAGCTaaaa                                                                                                 >  1:756999/1‑141 (MQ=255)                                           ttGCTGTAATTTAAATAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAAt                                                                                                >  2:825882/1‑141 (MQ=255)                                            tGCTGTAATTTAAATAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAAtt                                                                                               >  1:701563/1‑141 (MQ=255)                                              cTGTAATTTAAATAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTc                                                                                             >  2:52236/1‑141 (MQ=255)                                               tGTAATTTAAATAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCt                                                                                            >  1:188838/1‑141 (MQ=255)                                                  aaTTTAAATAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGat                                                                                         <  1:865522/141‑2 (MQ=255)                                                    tttAAATAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCa                                                                                       <  2:775754/141‑1 (MQ=255)                                                       aaaTAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCatat                                                                                    <  1:912782/141‑1 (MQ=255)                                                        aaTAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATc                                                                                   >  1:331196/1‑141 (MQ=255)                                                         aTAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCa                                                                                  <  1:26529/141‑1 (MQ=255)                                                          tAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCAt                                                                                 >  2:579834/1‑141 (MQ=255)                                                          tAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCAt                                                                                 >  1:165015/1‑141 (MQ=255)                                                          tAACTAATATTTCACG‑AAAACTTCTCTTTGTTGTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCATATTTTAAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCAt                                                                                 <  2:772142/141‑1 (MQ=255)                                                           aaCTAATATTTCTCGAAAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCAt                                                                                 <  2:698153/141‑1 (MQ=255)                                                            aCTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATAc                                                                               >  1:603144/1‑141 (MQ=255)                                                                 tatTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTTTTTTTTTTAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTTGTTTATCTAAAATTTCTGACTATATCATACCAttt                                                                          >  2:53304/1‑140 (MQ=255)                                                                     tctcG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTa                                                                      >  2:429628/1‑141 (MQ=255)                                                                      ctcG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTAc                                                                     <  1:771970/141‑1 (MQ=255)                                                                       tcG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTaaaa                                                                                                 <  2:873023/112‑1 (MQ=255)                                                                       tcG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTaaaa                                                                                                 >  1:873023/1‑112 (MQ=255)                                                                       tcG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACt                                                                    >  1:39903/1‑141 (MQ=255)                                                                        cG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACtt                                                                   >  1:461076/1‑141 (MQ=255)                                                                        cG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACtt                                                                   >  1:519232/1‑141 (MQ=255)                                                                             aacagctctTTATTTTTTAAAAAACCTTAACCCACAAAAACCAGCACCAATCATTAATTTATTGCTTCTTTTTAAAAAA‑TTTTATAATTGTTTTGTTTTACCTAAAATTTCTGACCATAATATACAATTCATTCCTTCCTc                                                               >  2:183669/6‑141 (MQ=255)                                                                             aaaTTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATc                                                               >  1:563368/1‑141 (MQ=255)                                                                             aaaTTCTCTTTCTGTTCTAATTTTTCTTATCGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCATAAAA‑TTTTATTATTTTTTTGGTTTAGCTAATATTTCTTACCATATCATACCATTGATTACTTCATc                                                               <  2:641780/141‑1 (MQ=255)                                                                              aaTTCTCTTTGTTTTTTAATTTTTCTCCACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTCATAATTGTCTTGGTTTAGATAAAATTTCTGACCCTATCATACCATTGATTACTTCATCt                                                              <  2:773047/141‑1 (MQ=255)                                                                                   tctTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATc                                                         <  1:114156/141‑1 (MQ=255)                                                                                    ctTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCa                                                        >  1:473069/1‑141 (MQ=255)                                                                                    ctTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCa                                                        <  1:193079/141‑1 (MQ=255)                                                                                      ttGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAATTTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCaa                                                       >  2:610963/1‑141 (MQ=255)                                                                                              tAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACg                                              >  1:639661/1‑141 (MQ=255)                                                                                              tAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACg                                              <  1:315747/141‑1 (MQ=255)                                                                                                aTTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACTATTGATTACTTCATCTTTATCAAATTGGAACGCt                                            >  1:622700/1‑141 (MQ=255)                                                                                                 tttttCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTg                                           >  1:386127/1‑141 (MQ=255)                                                                                                  ttttCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGa                                          >  2:629285/1‑141 (MQ=255)                                                                                                     tCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGAttt                                       >  1:360626/1‑141 (MQ=255)                                                                                                        tAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGTCCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGATTTAGt                                    <  1:436358/141‑1 (MQ=255)                                                                                                        tAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGATTTAGt                                    >  2:889180/1‑141 (MQ=255)                                                                                                        tAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGATTTAGt                                    <  1:339726/141‑1 (MQ=255)                                                                                                          aCGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGATTTAGTCa                                  <  1:840615/141‑1 (MQ=255)                                                                                                          aCGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGATTTAGTCa                                  <  1:422358/141‑1 (MQ=255)                                                                                                          aCGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATACCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGATTTAGTCa                                  <  2:695507/141‑1 (MQ=255)                                                                                                           cGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGATTTAGTCaa                                 >  1:479680/1‑141 (MQ=255)                                                                                                                aaaaaCAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACt                                                                    <  1:274572/101‑1 (MQ=255)                                                                                                                aaaaaCAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACt                                                                    >  2:274572/1‑101 (MQ=255)                                                                                                                 aaaaCAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGATTTAGTCAAATCttt                           >  1:557335/1‑141 (MQ=255)                                                                                                                  aaaCAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGATTTAGTCAAATCtttt                          >  1:265578/1‑141 (MQ=255)                                                                                                                    aCAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGATTTAGTCAAATCTTTTTc                        >  1:178010/1‑141 (MQ=255)                                                                                                                     cAAGCAACTACCATTACGATATTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTTATTTAGTCAAATCTTTTTCg                       <  2:818306/141‑1 (MQ=255)                                                                                                                     cAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGATTTAGTCAAATCTTTTTCg                       <  1:250510/141‑1 (MQ=255)                                                                                                                      aaGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGATTTAGTCAAATCTTTTTCGa                      <  2:461076/141‑1 (MQ=255)                                                                                                                       aGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGATTTAGTCAAATCTTTTTCGAc                     >  1:165344/1‑141 (MQ=255)                                                                                                                        gCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCCTCTTTATCAAATTGGAACGCTGATTTAGTCAAATCTTTTTCGACa                    >  1:696296/1‑141 (MQ=255)                                                                                                                        gCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGATTTAGTCAAATCTTTTTCGACa                    <  2:307723/141‑1 (MQ=255)                                                                                                                        gCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGATTTAGTCAAATCTTTTTCGACa                    <  2:423540/141‑1 (MQ=255)                                                                                                                         cAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGATTTAGTCAAATCTTTTTCGACAt                   >  1:268056/1‑141 (MQ=255)                                                                                                                             tACCATTACGATTTTACTTCTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTTCTTTATTTTTATCAAATTGGAACGCTGATTTTGTCATATCTTTTTCGACATTTTg               <  2:425019/141‑1 (MQ=255)                                                                                                                             tACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGATTTAGTCAAATCTTTTTCGACATTTTg               <  1:453948/141‑1 (MQ=255)                                                                                                                              aCCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGATTTAGTCAAATCTTTTTCGACATTTTga              <  1:579834/141‑1 (MQ=255)                                                                                                                                cATTACTAGAGTGCTGTTTGGCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGATTTAGTCAAATCTTTTTCGACATTTTgaga            <  2:592286/141‑1 (MQ=255)                                                                                                                                    aCGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGATTTAGTCAAATCTTTTTCGACATTTTGAGAATTa        <  1:176436/141‑1 (MQ=255)                                                                                                                                        tAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGATTTAGTCAAATCTTTTTCGACATTTTGAGAATTAagca    >  2:887702/1‑141 (MQ=255)                                                                                                                                          gTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGATTTAGTCAAATCTTTTTCGACATTTTGAGAATTAagcagc  <  1:603164/141‑1 (MQ=255)                                                                                                                                          gTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGATTTAGTCAAATCTTTTTCGACATTTTGAGAATTAagcagc  <  1:713421/141‑1 (MQ=255)                                                                                                                                          gTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGATTTAGTCAAATCTTTTTCGACATTTTGAGAATTAagcagc  >  2:564533/1‑141 (MQ=255)                                                                                                                                          gTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGATTTAGTCAAATCTTTTTCGACATTTTGAGAATTAagcagc  <  2:58282/141‑1 (MQ=255)                                                                                                                                          |                                                                                                                                              CCTTGTCATAAAAGCAGATTCAATTTTAGACTAATCAATTTTTTGCTGTAATTTAAATAACTAATATTTCTCG‑AAAAATTCTCTTTGTTTTTTAATTTTTCTTAACGTAAAAAAACAAGCAACTACCATTACGATAGTGCTTGTTTTCAAAAAA‑TTTTATAATTGTTTTGGTTTAGCTAAAATTTCTGACCATATCATACCATTGATTACTTCATCTTTATCAAATTGGAACGCTGATTTAGTCAAATCTTTTTCGACATTTTGAGAATTAAGCAGC  >  CP000730/1682403‑1682679

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.