New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1172325 =	23 (0.680)	3 (0.100)	3/246	4.9	12.9%	intergenic (+52/+393)	USA300HOU_1101/USA300HOU_1103	hypothetical protein/exotoxin
	?	CP000730	1172364 =	20 (0.670)					intergenic (+91/+354)	USA300HOU_1101/USA300HOU_1103	hypothetical protein/exotoxin
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTCTGTAGAATTTCTTTTTGAAATTCTCTATGTTGGGGCCCCGCCTATAATTGAAAAATGCTTGTTACATGGGCATTTTCATTCGGTCAACTACTACCAATATAATATTGTAGAGCCTAAGACATTGATTTATTATGTCTTAGGCTCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1172473‑1172325 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgtcttaggctctaCAATATTATATTGGTAGTAGTTGACCGAATGAAAATGCCCATGTAACAAGCATTTTTCAATTATAGGCGGGGCCCCAACATAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACAC  >  CP000730/1172364‑1172500                                                                                                                                                                                                                                                                                                GTCTGTAGAATTTCTTTTTGAAATTCTCTATGTTGGGGCCCCGCCTATAATTGAAAAATGCTTGTTACATGGGCATTTTCATTCGGTCAACTACTACCAATATAATATTGTAGAGCCTAAGACATTGATTTATTATGTCTT                                                                                                                                                   >  2:326209/1‑141                                                                                    CGGTCAACTACTACCAATATAATATTGTAGAGCCTAAGACATTGATTTATTATGTCTTAGGCTCTACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGCCCATGTAACAAGCATTTTTCAATTATAGGCGGGGCCC                                                                >  1:175771/1‑141                                                                                              CTACCAATATAATATTGTAGAGCCTAAGACATTGATTTATTATGTCTTAGGCTCTACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGCCCATGTAACAAGCATTTTTCAATTATAGGCGGGGCCCCAACATAGAG                                                      >  1:296809/1‑141                                                                                                                             TTGATTTATTATGTCTTAGGCTCTACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGCCCATGTAACAAGCATTTTTCAATTATAGGCGGGGCCCCAACATAGAGAATTTCAAAAAGAAATTCTACAGACAATGCA                       >  2:265955/1‑141                                                                                                                                       ATGTCTTAGGCTCTACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGCCCATGTAACAAGCATTTTTCAATTATAGGCGGGGCCCCAACATAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGcc             <  1:133024/141‑3                                                                                                                                        TGTCTTAGGCTCTACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGCCCATGTAACAAGCATTTTTCAATTATAGGCGGGGCCCCAACATAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGTGG            <  2:386919/141‑1                                                                                                                                                GCTCTACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGCCCATGTAACAAGCATTTTTCAATTATAGGCGGGGCCCCAACATAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGTGGGCCCCAAC    <  1:173994/141‑1                                                                                                                                                  TCTACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGCCCATGTAACAAGCATTTTTCAATTATAGGCGGGGCCCCAACATAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACAC  <  1:366932/141‑1                                                                                                                                                                                                                                                                                                GTCTGTAGAATTTCTTTTTGAAATTCTCTATGTTGGGGCCCCGCCTATAATTGAAAAATGCTTGTTACATGGGCATTTTCATTCGGTCAACTACTACCAATATAATATTGTAGAGCCTAAGACATTGATTTATTATGTCTTAGGCTCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1172473‑1172325 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgtcttaggctctaCAATATTATATTGGTAGTAGTTGACCGAATGAAAATGCCCATGTAACAAGCATTTTTCAATTATAGGCGGGGCCCCAACATAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACAC  >  CP000730/1172364‑1172500

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.