New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1172325 =	23 (0.680)	3 (0.100)	3/246	4.9	12.9%	intergenic (+52/+393)	USA300HOU_1101/USA300HOU_1103	hypothetical protein/exotoxin
	?	CP000730	1172364 =	20 (0.670)					intergenic (+91/+354)	USA300HOU_1101/USA300HOU_1103	hypothetical protein/exotoxin
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTATAGTTACTATGTCTCATTAAAAGAACACTAATCATGGGACAATAAAGTATTGCTATAATAATTTAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCTACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGCCCATGTAACAAGCATTTTTCAATTATAGGCGGGGCCCCAACATAGAGAATTTCAAAAAGA  >  CP000730/1172186‑1172461                                                                                                                                            |                                                                                                                                         aaGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTATAGTTACTATGTCTCATTAAAAGAACACTAATCATGGGACAATAAAGTATTGCTATAATAATTTAATCATTAAATGAAGGAATa                                                                                                                                         <  1:102105/141‑1 (MQ=255)   gAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTATAGTTACTATGTCTCATTAAAAGAACACTAATCATGGGACAATAAAGTATTGCTATAATAATTTAATCATTAAATGAAGGAATaga                                                                                                                                       >  1:326209/1‑141 (MQ=255)        gggAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTATAGTTACTATGTCTCATTAAAAGAACACTAATCATGGGACAATAAAGTATTGCTATAATAATTTAATCATTAAATGAAGGAATAGAGCCTa                                                                                                                                  >  2:299955/1‑141 (MQ=255)                  aaCTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTATAGTTACTATGTCTCATTAAAAGAACACTAATCATGGGACAATAAAGTATTGCTATAATAATTTAATCATTAAATGAAGGAATAGAGCCTAAGACataata                                                                                                                        <  2:245760/141‑1 (MQ=255)                        aagaTGCTAGATTTCGAACGATTATTAAACTTTATAGTTACTATGTCTCATTAAAAGAACACTAATCATGGGACAATAAAGTATTGCTATAATAATTTAATCATTAAATGAAGGAATAGAGCCTAAGACATAATGAATCaa                                                                                                                  <  2:323436/141‑1 (MQ=255)                                  aTTTAGAACGATTATTAAACTTTATAGTTACTATGTCTCATTAAAAGAACACTAATCATGGGACAATAAAGTATTGCTATAATAATTTAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGc                                                                                                        >  1:34593/1‑141 (MQ=255)                                  aTTTAGAACGATTATTAAACTTTATAGTTACTATGTCTCATTAAAAGAACACTAATCATGGGACAATAAAGTATTGCTATAATAATTTAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGc                                                                                                        <  1:324274/141‑1 (MQ=255)                                        aaCGATTATTAAACTTTATAGTTACTATGTCTCATTAAAAGAACACTAATCATGGGACAATAAAGTATTGCTATAATAATTTAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCTACa                                                                                                  >  1:283161/1‑141 (MQ=255)                                        aaCGATTATTAAACTTTATAGTTACTATGTCTCATTAAAAGAACACTAATCATGGGACAATAAAGTATTGCTATAATAATTTAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCTACa                                                                                                  >  2:33576/1‑141 (MQ=255)                                                                    gTCTCATTAAAAGAACACTTATCATGGGACAATAAAGTATTGCTATAATAATTTAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCTACAATATTATATTGGTAGTAGTTGACCGAAt                                                                      <  2:389119/141‑1 (MQ=255)                                                                    gTCTCATTAAAAGAACACTAATCATGGGACAATAAAGTATTGCTATAATAATTTAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCTACAATATTATATTGGTAGTAGTTGACCGAAt                                                                      <  1:372124/141‑1 (MQ=255)                                                                      ctcATTAAAAGAACACTAATCATGGGACAATAAAGTATTGCTATAATAATTTAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGACTTAGGCTCTACAATATTATATTGGTAGTAGTTGACCGAATGa                                                                    >  2:366932/1‑141 (MQ=255)                                                                              aaGAACACTAATCATGGGACAATAAAGTATTGCTATAATAATTTAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCTACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGccc                                                            >  1:297433/1‑141 (MQ=255)                                                                              aaGAACACTAATCATGGGACAATAAAGTATTGCTATAATAATTTAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCTACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGccc                                                            <  1:33576/141‑1 (MQ=255)                                                                              aaGAACACTAATCATGGGACAATAAAGTATTGCTATAATAATTTAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCTACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGccc                                                            <  2:283161/141‑1 (MQ=255)                                                                                  acacTAATCATGGGACAATAAAGTATTGCTATAATAATTTAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCTACAATATTATATTGGtagtag                                                                                >  1:180385/1‑117 (MQ=255)                                                                                  acacTAATCATGGGACAATAAAGTATTGCTATAATAATTTAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCTACAATATTATATTGGtagtag                                                                                <  2:180385/117‑1 (MQ=255)                                                                                               gACAATAAAGTATTGCTATAATAATTTAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCTACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGCCCATGTAACAAGCAttttt                                           >  1:94775/1‑141 (MQ=255)                                                                                                 cAATAAAGTATTGCTATAATAATTTAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCTACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGCCCATGTAACAAGCATTTTTCa                                         <  2:133472/141‑1 (MQ=255)                                                                                                        gTATTGCTATAATCATTTAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCTACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGCCCATGTAACAAGCATTTTTCAATTATAg                                  >  2:133024/1‑141 (MQ=255)                                                                                                                        ttAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCTACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGCCCATGTAACAAGCATTTTTCAATTATAGGCGGGGCCCCAACATa                  >  2:308714/1‑141 (MQ=255)                                                                                                                                       aGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCTACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGCCCATGTAACAAGCATTTTTCAATTATAGGCGGGGCCCCAACATAGAGAATTTCAAAAAg   >  1:42514/1‑141 (MQ=255)                                                                                                                                        ggAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCTACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGCCCATGTAACAAGCATTTTTCAATTATAGGCGGGGCCCCAACATAGAGAATTTCAAAAAGa  <  2:34593/141‑1 (MQ=255)                                                                                                                                            |                                                                                                                                         AAGAAATGGGAAAACCAAACTAGAAGATGCTAGATTTAGAACGATTATTAAACTTTATAGTTACTATGTCTCATTAAAAGAACACTAATCATGGGACAATAAAGTATTGCTATAATAATTTAATCATTAAATGAAGGAATAGAGCCTAAGACATAATAAATCAATGTCTTAGGCTCTACAATATTATATTGGTAGTAGTTGACCGAATGAAAATGCCCATGTAACAAGCATTTTTCAATTATAGGCGGGGCCCCAACATAGAGAATTTCAAAAAGA  >  CP000730/1172186‑1172461

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.