| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2624069 | 3 (0.090) | 6 (0.180) | 4/268 | 4.7 | 67.0% | intergenic (‑1399/+2637) | USA300HOU_2485/sarT | MFS family major facilitator transporter, cation symporter/staphylococcal accessory regulator T |
| ? | CP000730 | = 2624435 | 3 (0.090) | intergenic (‑1765/+2271) | USA300HOU_2485/sarT | MFS family major facilitator transporter, cation symporter/staphylococcal accessory regulator T | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
TTTCTCGAATGGAATTTCTTCTTTTTCTACAATCGAGTCTCCTTTTACAGGTCCATATTTTGTTACGCTATCGACCGGTGGTCTAACTACATCTCCTGTTTCTGGATTCTTAATTCCTGGTTTACCTGGAACTTCCTCTTTCT > CP000730/2623939‑2624081 | tttctCGAATGGAATTTCTTCTTTTTCTACAATCGAGTCTCCTTTTACAGGTCCATATTTTGTTACGCTATCGACCGGTGGTCTAACTACATCTCCTGTTTCTGGATTCTTAATTCCTGGTTTACCTGGAACTTCCTCttt > 1:179865/1‑141 (MQ=32) ttttcGAGTGGAATTTCTTCTTTTTCTACAATCTAGTCTCCTTTTACAGGTCCATATTTTGTTACGCTATCGACCGGTTGTCTAACTACATCTCCTGTTTCTGGATTCTTAATTCCTGGTTTACCTGGAACTTCCTCATtc < 2:30888/138‑1 (MQ=11) cgtcGAATGGAATTTCTTCTTTTTCTACAATCGAGTCTCCTTTTACAGGTCCATATTTTGTTACGCTATCGACCGGTGGTCTAACTACATCTCCTGTTTCTGGATTCTTAATTCCTGGTTTACCTGGAACTTCCTCTTtct < 1:373508/139‑1 (MQ=14) | TTTCTCGAATGGAATTTCTTCTTTTTCTACAATCGAGTCTCCTTTTACAGGTCCATATTTTGTTACGCTATCGACCGGTGGTCTAACTACATCTCCTGTTTCTGGATTCTTAATTCCTGGTTTACCTGGAACTTCCTCTTTCT > CP000730/2623939‑2624081 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |