New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 26240693 (0.090)6 (0.180) 4/268 4.7 67.0% intergenic (‑1399/+2637) USA300HOU_2485/sarT MFS family major facilitator transporter, cation symporter/staphylococcal accessory regulator T
?CP000730 = 2624435 3 (0.090)intergenic (‑1765/+2271) USA300HOU_2485/sarT MFS family major facilitator transporter, cation symporter/staphylococcal accessory regulator T
Rejected: Coverage evenness skew score above cutoff.

GCTAAATCAGGATTAAATTTACGTTCTTTCTTGAATGGAATTTCTTCTTTTTCTACAATCGAGTCTCCTTTTACAGGTCCATATTTTGTTACGCTATCGACCGGTGGTCTAACTACATCTCCTGTTTCTGGATTCTTAATTCCTGGTTTACCTGGAACTTCCTCTTTCTCTC  >  CP000730/2624297‑2624468
                                                                                                                                          |                                 
gCTAAATCAGGATTAAATTTACGTTCTTTCTTGAATGGAATTTCTTCTTTTTCTACAATCGAGTCTCCTTTTACAGGTCCATATTTTGTTACGCTATCGACCGGTGGTCTAACTACATCTCCTGTTTCTGGATTCTTAAtt                                 <  2:292908/141‑1 (MQ=35)
            ttAAATTTACGTTCTTTCTTGAATGGAATTTCTTCTTTTTCTACAATCGAGTCTCCTTTTACAGGTCCATATTTTGTTACGCTATCGACCGGTGGTCTAACTACATCTCCTGTTTCTGGATTCTTAATTCCTGGTTTACCt                     >  1:363778/1‑141 (MQ=32)
              ataTTTACCTTCTCTCTTGAGTTTAATTTCTTCTTTTTCGACACTCGAGTCTCCTTTTAGAGGTCTATATTTTCTTACGCTATCGACCTGTGGTCTAACTACTTCTCCTGTTTCTGGATTCTTAATTCCAGGtaaaccagg                   <  2:15588/139‑9 (MQ=11)
               aaTTTACGTTCTTTCTTGAATGGAATTTCTTCTTTTTCTACAATCGAGTCTCCTTTTACAGGTCCATATTTTGTTACGCTATCGACCGGTGGTCTAACTACATCTCCTGTTTCTGGATTCTTAATTCCTGGTTTACCTGGa                  <  1:314936/141‑1 (MQ=32)
                               tGAATGGAATTTCTTCTTTTTCTACAATCGAGTCTCCTTTTACAGGTCCATATTTTGTTACGCTATCGACCGGTGGTCTAACTACATCTCCTGTTTCTGGATTCTTAATTCCTGGTTTACCTGGAACTTCCTCTTtctctc  >  1:57486/1‑141 (MQ=11)
                                                                                                                                          |                                 
GCTAAATCAGGATTAAATTTACGTTCTTTCTTGAATGGAATTTCTTCTTTTTCTACAATCGAGTCTCCTTTTACAGGTCCATATTTTGTTACGCTATCGACCGGTGGTCTAACTACATCTCCTGTTTCTGGATTCTTAATTCCTGGTTTACCTGGAACTTCCTCTTTCTCTC  >  CP000730/2624297‑2624468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.