| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2440041 = | 66 (1.210) | 5 (0.100) | 5/244 | 2.8 | 7.2% | intergenic (+2/+64) | USA300HOU_2302/glvC | hypothetical protein/PTS family arbutin‑salicin‑cellobiose (ASC) porter component IIBC |
| ? | CP000730 | 2440099 = | 69 (1.390) | intergenic (+60/+6) | USA300HOU_2302/glvC | hypothetical protein/PTS family arbutin‑salicin‑cellobiose (ASC) porter component IIBC | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAGTTGTAGTAGGTATGACAGTACCACAAGTTCGTGAAGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2440187‑2440041‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGA > CP000730/2440099‑2440238 AAGTTGTAGTAGGTATGACAGTACCACAAGTTCGTGAAGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTG < 1:32439/141‑1AAGTTGTAGTAGGTATGACAGTACCACAAGTTCGTGAAGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTG > 2:229763/1‑141 AGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAA > 1:445664/1‑141 GACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTA > 2:323064/1‑134 GACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTA < 1:323064/134‑1 CATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACG < 1:407530/107‑1 CATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACG > 2:407530/1‑107 ATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACTTACTACAGCTTGGATACTCATACCACTCTTTACTAATCCGTGTGCCATTTGT < 2:175898/141‑1 GTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTG < 1:109488/141‑1 TTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTG < 2:537518/141‑1 TTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTG > 1:347988/1‑141 TTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGA < 2:142449/141‑1 TTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGA < 1:579072/141‑1 AAGTTGTAGTAGGTATGACAGTACCACAAGTTCGTGAAGCATTTGAACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2440187‑2440041‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGGATACTCTTACCACTCTTTACTAATCCGTGTGCCATTTGTTGATGCGTGA > CP000730/2440099‑2440238 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |