Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP000730	1040830	1040993	164	3 [1]	[0] 2	USA300HOU_0983/USA300HOU_0984	competence protein/glycosyltransferase

CTATGGAAAAGGGGATTTTCAATTACGATAATGCGAATGTATTAAAATTAGATACTAATCAG  >  CP000730/1040994‑1041055 |                                                              cTATGGAAAAGGGGATTTTCAATTACGATAATGCGAATGTATTAAAATTAGATACTAATCAg  >  1:90597/1‑62 (MQ=255) cTATGGAAAAGGGGATTTTCAATTACGATAATGCGAATGTATTAAAATTAGATACTAATCAg  <  2:90597/62‑1 (MQ=255) |                                                              CTATGGAAAAGGGGATTTTCAATTACGATAATGCGAATGTATTAAAATTAGATACTAATCAG  >  CP000730/1040994‑1041055

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑