Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP000730	54593	54624	32	2 [0]	[1] 3	USA300HOU_0044/cch	possible transcriptional regulator/possible beta‑lactamase

TATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGCGGTTTTTTAGACACTTCATAAAGGGATTTTGAACGTATCAGAACATATGAGGTTTATAGGAATTGCTGTTATGTTTTTTGATCACA  >  CP000730/54608‑54748                  |                                                                                                                            tatttattAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGCGGTTTTTTAGACACTTCATAAAGGGATTTTGAACGTATCAGAACATATGAGGTTTATAGGAATTGCTGTTATGTTTTTTGATcaca  >  2:51026/1‑141 (MQ=255)                  cATAGAAAACCGTATCATTAACCGATACGCAGAGATGCGGTTTTTTAGACACTTCATAAAGGGATTTTGAACGTATCAGAACATATGAGGttt                                 >  1:208821/1‑93 (MQ=255)                  cATAGAAAACCGTATCATTAACCGATACGCAGAGATGCGGTTTTTTAGACACTTCATAAAGGGATTTTGAACGTATCAGAACATATGAGGttt                                 <  2:208821/93‑1 (MQ=255)                  |                                                                                                                            TATTTATTAATAAATATCATAGAAAACCGTATCATTAACCGATACGCAGAGATGCGGTTTTTTAGACACTTCATAAAGGGATTTTGAACGTATCAGAACATATGAGGTTTATAGGAATTGCTGTTATGTTTTTTGATCACA  >  CP000730/54608‑54748

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑