New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 2660570 =43 (0.930)4 (0.100) 4/234 NT 9.9% intergenic (+12/+237) ddh/USA300HOU_2514 D‑lactate dehydrogenase/HAD superfamily hydrolase
?CP000730 2660603 = 34 (0.810)intergenic (+45/+204) ddh/USA300HOU_2514 D‑lactate dehydrogenase/HAD superfamily hydrolase

TCTCAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGCCTTTGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2660719‑2660570
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctttgcttttTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGA  >  CP000730/2660603‑2660737
                                                                                                                                                                                                                                                                                             
TCTCAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGC                                                                                                                                                   <  2:110056/140‑1
  TCAAACAGCTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGCCT                                                                                                                                                 <  2:211960/140‑1
     AACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGCCTTTG                                                                                                                                              <  1:484242/140‑1
      ACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGAAAAGGCACATGGCGCGCCTTTGC                                                                                                                                             >  1:51493/1‑140
       CAGGTTAGGCACTAATGCCATAGTAAAATAACCGCACTCAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAAATATACAAAATAAAAAGCAAAGGCACATGGCGCGCCCTTGCT                                                                                                                                            >  1:13576/1‑140
        AGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAAGCACATGGCACGCCTTTGCTT                                                                                                                                           >  1:41305/1‑140
                                          ACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCGCGCCATGTGCCTTTGCTCTTTATTTTGTATATCTGTATCAAAATCGATTTGA                                                                                                         <  1:348878/140‑1
                                            TAAATTCATTTGAATAGATAATAAAATTAAGCGGATTCTAATCAAATCGATTTTGATACATATATACAAAATAAAAATCAAATGCACATGGCGCGCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATT                                                                                                       <  2:180755/140‑1
                                                                                                                       agGCAAAGGCACATGGCTCGTCTTTGTTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCT                            <  2:348878/138‑1
                                                                                                                                 ACATGGCGCGCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATA                  >  2:362677/1‑140
                                                                                                                                           CCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGTTTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATT        <  1:199709/140‑1
                                                                                                                                           CCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATT        <  2:521241/140‑1
                                                                                                                                           CCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTACCATCTATTCAAATGATTTTATTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATT        <  2:442575/140‑1
                                                                                                                                                 CTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGTTGA  >  2:506494/1‑140
                                                                                                                                                                                                                                                                                             
TCTCAAACAGGTTAGGCAATAATGCCATAGTAAAATAAGCGCACTAAAATCATTTGAATAGATGATAAAATAAAGCGGATTTTAATCAAATCGATTTTGATACAGATATACAAAATAAAAAGCAAAGGCACATGGCGCGCCTTTGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2660719‑2660570
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctttgcttttTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCCTAACCTGTTTGAGATATATTAATATTTGATGA  >  CP000730/2660603‑2660737

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.