New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 2660570 =43 (0.930)4 (0.100) 4/234 NT 9.9% intergenic (+12/+237) ddh/USA300HOU_2514 D‑lactate dehydrogenase/HAD superfamily hydrolase
?CP000730 2660603 = 34 (0.810)intergenic (+45/+204) ddh/USA300HOU_2514 D‑lactate dehydrogenase/HAD superfamily hydrolase

AAAGAATTTTAGTAACACCACATATTGCTTTCTTCTCTGATGAAGCAGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCC  >  CP000730/2660431‑2660705
                                                                                                                                           |                                                                                                                                       
aaaGAATTTTAGTAACACCGCATATTACTTTCTTCTCTGATGCATCTCTCTAAACGCCTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTa                                                                                                                                         <  1:15685/140‑1 (MQ=255)
aaaGAATTTTAGTAACACCACATATTGCTTTCTTCTCTGATGAAGCAGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTa                                                                                                                                         <  1:490857/140‑1 (MQ=255)
 aaGAATTTTAGTAACACCACATATTGCTTTCTTCTCTGATGAAGCAGTACAAAACATAGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCACTAACACTGGTACATGTGAAACACCCTTAACTTACTTTACATATTTaa                                                                                                                                        >  2:74390/1‑140 (MQ=255)
 aaGAATTTTAGTAACACCACATATTGCTTTCTTAGCTGATGAAGCAGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAACCACGTTTAAATTAATATATATATTTac                                                                                                                                        >  2:16910/1‑139 (MQ=255)
  aGAATTTTAGTAACACCACATATTGCTTTCTTCTCTGATGAAGCAGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTaaa                                                                                                                                       >  1:90238/1‑140 (MQ=255)
   gAATTTTAGTCATACCACATATTGCTTTCTTCTCTGATGAAGAAGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTaaaa                                                                                                                                      <  1:480250/140‑1 (MQ=255)
   gAATTTTAGTAACACCACATATTGCTTTCTTCTCTGATGAAGCAGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTaaaa                                                                                                                                      >  1:111676/1‑140 (MQ=255)
    tcaacaaatattaatatatctcaaacaggttaggcaataatgccatagtaaaataagcgcactaaaatcatttgaatagatgataaaataaagcggattttaatcaaatcgattttgatacagatatacaaaataAAAAg                                                                                                                                     >  2:506494‑M1/136‑140 (MQ=255)
        ttAGTAACACCACATATTGCTTTCTTCTCTGATGAAGCAGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCaaa                                                                                                                                 >  2:349854/1‑140 (MQ=255)
        ttAGTAACACCACATATTGCTTTCTTCTATGATGAAGCAGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATAAATTTAAAAACaaa                                                                                                                                 >  2:197676/1‑140 (MQ=255)
          aatattaatatatctcaaacaggttaggcaataatgccatagtaaaataagcgcactaaaatcatttgaatagatgataaaataaagcggattttaatcaaatcgattttgatacagatatacaaaataAAAAGCAAAgg                                                                                                                               <  2:521241‑M1/11‑1 (MQ=255)
          aatattaatatatctcaaacaggttaggcaataatgccatagtaaaataagcgcactaaaatcatttgaatagatgataaaataaagcggattttaaacaaatcgattttgatacagatatacaaaataAAAAGCAAAgg                                                                                                                               <  1:199709‑M1/11‑1 (MQ=255)
          aatattaatatatctcaaacaggttaggcaataatgccatagtaaaataagcgcaataaaatcatttgaatagatggtaaaataaagcggattttaatcaaatcgattttgatacagatatacaaaataAAAAGCAAAgg                                                                                                                               <  2:442575‑M1/11‑1 (MQ=255)
            tAACACCACATATTGTTTTCTTCTCTGATGAAACAGTACAAAAACTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACAGATCAAACACGTTTAAATTAATATCTATATTTAAAAGCAAAgctg                                                                                                                             >  2:283198/1‑137 (MQ=255)
                  cacaTATTGCTTTCTTCTCTGATGAAGCAGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCAt                                                                                                                       >  1:63352/1‑140 (MQ=255)
                    tatctcaaacaggttaggcaataatgccatagtaaaataagcgcactaaaatcatttgaatagatgataaaataaagcggattttaatcaaatcgattttgatacagatatacaaaataAAAAGCAAAGGCGCGCCAtgt                                                                                                                     >  2:362677‑M1/120‑140 (MQ=255)
                      tatTGCTTTCTTCTCTGATGAAGCAGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGc                                                                                                                   <  1:500941/140‑1 (MQ=255)
                       atTGCTTTCTTCTCTGATGAAGCAGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGcc                                                                                                                  <  1:450641/140‑1 (MQ=255)
                       atTGCTTTCTTCTCTGATGAAGCAGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGcc                                                                                                                  >  2:109315/1‑140 (MQ=255)
                         tGCTTTCCTCTCTGATGAAGCAGTACGAAGCCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACAGTGGTACATGTGAAACACTTTTAAATTAATATATTTATTTATAAGCAAAGGCGCGTCATGTGTCtt                                                                                                                <  2:286559/140‑1 (MQ=255)
                          gCTTTCTTCTCTGATGAAGCAGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGCCttt                                                                                                               >  1:67267/1‑140 (MQ=255)
                            tttATTCTCTGATGAAGCAGTACAAAACCTTGTTGAAGGTGGTTTAAACCCATCATTATCTGTCATTAACACTGGTACATGTGAAACACGTGTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGc                                                                                                             <  1:14943/140‑1 (MQ=255)
                             ttcttcTCTGATGAAGCAGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCt                                                                                                            <  1:515505/140‑1 (MQ=255)
                              aggttaggcaataatgccatagtaaaataagcgcactaaaatcatttgaatagatgataaaataaagcggattttaatcaaatcgattttgatacagatatacaaaataAAAAACAAAGACGAGCCATGTGCCTTtgcct                                                                                                           <  2:348878‑M1/31‑3 (MQ=255)
                                    ctGATGAAGCAGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGTCATGTGCCTTTGCTTTTTAtt                                                                                                     <  1:282748/140‑1 (MQ=255)
                                      gatgaAGCAGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAAGATATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTTAtttt                                                                                                   >  2:376829/1‑140 (MQ=255)
                                       atgaAGCAGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTTATTTTg                                                                                                  >  2:51493/1‑140 (MQ=255)
                                        tgaAGCAGTACAAAACCTTGTTGAAGGTGGTTGAAACGTAGCTTTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTTATCTTGt                                                                                                 <  1:374236/140‑1 (MQ=255)
                                           aGCAGTACAAAACCTTATTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTTAAAAACGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGCATTTGATTTTTATTTTGtata                                                                                              >  1:292967/1‑140 (MQ=255)
                                              aGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTTATTTTGTATATCt                                                                                           >  1:60913/1‑140 (MQ=255)
                                                tACACAGCCGTGTTGAAGGTGTTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTTATTTTGTATATCTGt                                                                                         <  2:154892/140‑1 (MQ=255)
                                                tACAAAACCTTGGTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTTATTTTGTATATCTGt                                                                                         <  2:154908/140‑1 (MQ=255)
                                                    aaaCCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGGTTTTTATTTTGTATATCTGTATCa                                                                                     >  2:55085/1‑140 (MQ=255)
                                                     agccTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTTATTTTGGATATCTGtcgcat                                                                                    <  2:93576/138‑6 (MQ=255)
                                                       tcTTGTTGAAGTGGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGTAAAGGCGCGCCATGTGCCTTTGCTTTTTATTTTGTATATCTGTATCaaaa                                                                                  <  2:319387/139‑1 (MQ=255)
                                                        cTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTTATTTTGTATATCTGTATCAAAAt                                                                                 <  1:549505/140‑1 (MQ=255)
                                                         ttgttgAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTCAATGAAGACGCACACCTTGTGCCTTTGCTTTTTATTTTGTATATCTGTATCACAATc                                                                                >  1:483138/1‑140 (MQ=255)
                                                         ttgttgAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTTATTTTGTATATCTGTATCAACAta                                                                                >  2:135075/1‑139 (MQ=255)
                                                         ttgttgAAGGTGGTATAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTTCTTTTGTATATCTGtctacaaatt                                                                                >  2:135312/1‑131 (MQ=255)
                                                            ttgAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGAt                                                                             <  1:528291/140‑1 (MQ=255)
                                                                   tggtTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTa                                                                      <  1:109315/140‑1 (MQ=255)
                                                                    tgtTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTaa                                                                     <  1:363822/139‑1 (MQ=255)
                                                                     gtTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTaaa                                                                    <  2:67267/140‑1 (MQ=255)
                                                                        tAAACGCAGCCTTATCTGTCATTAACACTGGTACAAAGGATACACGGTTACATTGTCATAGACATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCAATTTGATTAAAATc                                                                 >  1:129298/1‑140 (MQ=255)
                                                                        tAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAACAAAAGCGCGCCATGTGCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATc                                                                 >  1:280270/1‑140 (MQ=255)
                                                                                 caTTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATTTTTTTAATAGCTTTGGCGCGCCTTGTGCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCtttatt                                                        <  1:197282/140‑1 (MQ=255)
                                                                                             ttAACACTGGTACATGGGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTAtt                                            <  2:79803/140‑1 (MQ=255)
                                                                                              tAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTc                                           >  2:445745/1‑140 (MQ=255)
                                                                                                        aCAGGTGAAACACGTTTAAATCAATTTATATATTTAAAAGCAAAGGCGCGCCATTTGTCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCACCTATTCAAATGAtttt                                 <  1:283198/140‑1 (MQ=255)
                                                                                                         aatcaaatcgattttgatacagatatacaaaataAAAAGCAAAGGCGCGCCATGTGCATTTGATTTTTATTTTGTATATATGTATCAAAATCGATTTGATTAGAATCCGCTTAATTTTATTATCTATTCAAATGAATTTa                                <  2:180755‑M1/106‑1 (MQ=255)
                                                                                                           tcaaatcgattttgatacagatatacaaaataAAGAGCAAAGGCACATGGCGCGCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGt                              <  1:348878‑M1/108‑1 (MQ=255)
                                                                                                            gtgAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTTTTTTATCTTGTATTCAAATGATTTTAGTg                             >  2:247841/1‑140 (MQ=255)
                                                                                                                atcacGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGTCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCt                         <  1:81267/138‑1 (MQ=255)
                                                                                                                aaCACGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCt                         >  1:31035/1‑140 (MQ=255)
                                                                                                                   acGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTAt                      >  1:330842/1‑140 (MQ=255)
                                                                                                                   acGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTAt                      <  1:458455/140‑1 (MQ=255)
                                                                                                                     gTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTAttt                    >  1:276675/1‑140 (MQ=255)
                                                                                                                            ttAATATATATATTTAAAACCAAAGGCGCGCCATTTCCTTTTGCTTTTTATTTTGTATATCTTCATCAAAATCGATTTGCTTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATg             <  2:236943/140‑1 (MQ=255)
                                                                                                                                       atTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGcc  <  2:63352/140‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                       
AAAGAATTTTAGTAACACCACATATTGCTTTCTTCTCTGATGAAGCAGTACAAAACCTTGTTGAAGGTGGTTTAAACGCAGCATTATCTGTCATTAACACTGGTACATGTGAAACACGTTTAAATTAATATATATATTTAAAAGCAAAGGCGCGCCATGTGCCTTTGCTTTTTATTTTGTATATCTGTATCAAAATCGATTTGATTAAAATCCGCTTTATTTTATCATCTATTCAAATGATTTTAGTGCGCTTATTTTACTATGGCATTATTGCC  >  CP000730/2660431‑2660705

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.