New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	52495 =	66 (0.890)	120 (1.640) +T	6/282	8.5	62.7%	intergenic (+105/‑568)	USA300HOU_0043/USA300HOU_0044	hypothetical membrane protein/possible transcriptional regulator
	?	CP000730	= 52988	78 (1.060)					intergenic (+598/‑75)	USA300HOU_0043/USA300HOU_0044	hypothetical membrane protein/possible transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.

TATCGTTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTA  >  CP000730/52350‑52641                                                                                                                                                   |                                                                                                                                                   tATCGTTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTg                                                                                                                                                 >  2:109480/1‑149 (MQ=255)       tgttTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAaataa                                                                                                                                           >  2:247961/1‑149 (MQ=255)                   cATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCg                                                                                                                               <  2:543752/149‑1 (MQ=255)                      taaaTGCATTAAAGAAAAAGTTATTCAATGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCagag                                                                                                                                     <  1:37489/137‑1 (MQ=255)                      tAGATGCCTTAAAGAAATATTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCagag                                                                                                                                     <  1:525802/140‑1 (MQ=255)                         aatacTTAAAGAAATAGTTTTAAAAAGAAAAGAATTATAGATGTAATAACACTAAACTAATATTAATTCAGGATAATCTAGTCTTAATTGAAAAAAAAAAAAAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGaa                                                                                                                         <  2:287458/145‑1 (MQ=255)                         aTGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGaa                                                                                                                                  <  1:296631/140‑1 (MQ=255)                           gCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATAAGAAAAATGTT‑GTGGAAATAGCGTGACATAATCAGAGGAAtacttttataa                                                                                                                       >  2:122839/1‑139 (MQ=255)                              ttAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGtt                                                                                                                             >  1:398118/1‑140 (MQ=255)                              ttAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGtt                                                                                                                             <  1:1012337/140‑1 (MQ=255)                              ttAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAAAGTAGTCTTAATCGTTCTGAAATACGAAAAAAGTT‑GTGGAAAACGCGTGAAAGAATCAGAAGAAttggt                                                                                                                             >  1:118241/1‑136 (MQ=255)                               tAAAGAAATAGTATTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGttt                                                                                                                            <  1:452880/140‑1 (MQ=255)                                 aaGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTATGa                                                                                                                          >  1:816868/1‑140 (MQ=255)                                  aGAAATAGTTTTTGACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTGTTAATCGTTCTGAAATACGAAAAATCTT‑GTGGCACTTAACATATTCAATCAGAGGAATCGTTTGaa                                                                                                                         <  1:743692/140‑1 (MQ=255)                                  aGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGaa                                                                                                                         >  1:869814/1‑140 (MQ=255)                                  aGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATAGTTTGAAATCATCgta                                                                                                                >  2:35519/1‑149 (MQ=255)                                    aaaTAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTCAAATAATCAGAGGAATCGTTTGAAat                                                                                                                       >  1:314509/1‑140 (MQ=255)                                    aaaTAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAA‑AAAAGGAATGTTAGGGGAACTCGAGTGAAATAATCAGAGGAATCGTTTGAAat                                                                                                                       >  1:987405/1‑140 (MQ=255)                                      aTAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGAAAATGTAGTCTTAATCGTTAGGAAAAACGAAACATGTT‑GTGGAAGTCGCGGGAAAAAATCAGAGAGAACGTTTGgaagcc                                                                                                                     >  1:418616/1‑137 (MQ=255)                                        aGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGCGGAATCGTTTGAAatcatc                                                                                                                   <  1:1012715/140‑1 (MQ=255)                                         gTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCGGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCg                                                                                                                  >  1:652073/1‑140 (MQ=255)                                         gTTTTTCACTGAAAATATTTATAGATATAATTAAAAATAATTAATATTAAGCCAGGATAATGTAGTCCTAATCGTTCTGAAATACGAAAAAGGTT‑GTGGAAATCGCGTGAAATAATCAGGGGCATCGTTTGAAGTCATCg                                                                                                                  >  1:105120/1‑140 (MQ=255)                                           tttgCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg                                                                                                       <  2:399989/149‑1 (MQ=255)                                            tttCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtag                                                                                                               >  1:128083/1‑140 (MQ=255)                                               cACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGGTAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTaa                                                                                                            >  1:68008/1‑140 (MQ=255)                                                    aaaaTATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg                                                                                                       <  1:416201/140‑1 (MQ=255)                                                     aaaTATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgc                                                                                                      <  1:660530/140‑1 (MQ=255)                                                      aaTATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACg                                                                                            <  2:42057/149‑1 (MQ=255)                                                        tatTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaa                                                                                                   <  1:638017/140‑1 (MQ=255)                                                           ttATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAACCAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAAt                                                                                                <  1:33750/140‑1 (MQ=255)                                                                 atatAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTg                                                                                          <  1:911884/140‑1 (MQ=255)                                                                  tataATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATGGTCTGAAATAACCAGAGGAAGCGTTTCAAAGCATCGTAGTAATCGCGCGAAAACCACGTGAAATAATCag                                                                                <  2:577311/149‑1 (MQ=37)                                                                       ttaaaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATAAGCGGac                                                                           >  2:59760/1‑148 (MQ=255)                                                                          aaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTCATCGAGCGAAAATCACGTTAaataataa                                                                                 >  1:950647/1‑138 (MQ=255)                                                                               aattaatAGTAAGCCAGGATAAGGTAATCTTAATCGTTCTGAAAGACGAAAAATGTT‑GTGCGAAGCGGGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGa                                                                            <  1:480827/140‑1 (MQ=21)                                                                                 ttaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATAAGAGGAAt                                                                          >  1:63531/1‑140 (MQ=255)                                                                                     tatTAAGCCATGATAATGTAGTCTTAATCTTTTTGAAATAAGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGATTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGtt                                                                      <  1:965242/140‑1 (MQ=21)                                                                                     tatTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGtt                                                                      <  1:514927/140‑1 (MQ=255)                                                                                     tatTAAGCCAGGATAATGAAGTCTTAATCGTTCTGAAATACGAAAAATGCT‑GGGGAAATCGCGTGGCCTAAACAGATGAATAGATTCAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGtt                                                                      <  1:236540/140‑1 (MQ=21)                                                                                      tttAAGCAGGGTTTATGTATTCTTAATCGTAGTGATATACGAAAAATGTT‑TTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATTGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAatcatc                                                            <  2:388526/148‑1 (MQ=17)                                                                                      atTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGttt                                                                     <  1:811342/140‑1 (MQ=255)                                                                                      atTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGttt                                                                     <  1:811723/140‑1 (MQ=255)                                                                                        tAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCCCGTGAAATAATCACAGGAATCTTTTGAAAGCATCgt                                                          <  2:218327/149‑1 (MQ=255)                                                                                         aaGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaa                                                                  >  1:288140/1‑140 (MQ=255)                                                                                             cAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAatca                                                              >  1:719404/1‑140 (MQ=255)                                                                                                 aTAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgt                                                          >  1:4508/1‑140 (MQ=255)                                                                                                  tAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgta                                                         <  1:377753/140‑1 (MQ=255)                                                                                                  tAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GGGGAAATCGGTTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg                                                <  2:238670/149‑1 (MQ=255)                                                                                                   aaTGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtag                                                        >  1:252752/1‑140 (MQ=255)                                                                                                    aTGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtagt                                                       >  1:369310/1‑140 (MQ=255)                                                                                                        aGTCTTAATCGTTCTGAAATAGGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAATTAATCAGAGGAATCGTTTGAAATCATCGTAGTAATc                                                   <  1:699821/140‑1 (MQ=255)                                                                                                           cTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg                                                >  1:452010/1‑140 (MQ=255)                                                                                                              aaTCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGa                                             >  1:872320/1‑140 (MQ=255)                                                                                                               attgTTCTGAAATACGAAAAATGTT‑GTAAAAATCGCGTGAAATAATCAGAGGAAACGTTTGAAAACATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTg                                   <  2:294226/146‑1 (MQ=14)                                                                                                                     cTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCAc                                      <  1:592923/140‑1 (MQ=255)                                                                                                                      agAAATACTAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAAGAATCTTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACg                                     <  1:203773/139‑1 (MQ=255)                                                                                                                       gAAATACGAAAAATGTT‑GTGGAAATCGCGTGACATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGt                                    >  1:724868/1‑140 (MQ=255)                                                                                                                        aaaTACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACggg                                   >  1:500948/1‑138 (MQ=255)                                                                                                                        aaaTACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTg                                   >  1:404735/1‑140 (MQ=255)                                                                                                                               aaaaaTGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaaa                                          <  2:446693/126‑1 (MQ=255)                                                                                                                               aaaaaTGTT‑GTGGAAATAGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaataat                            <  1:155238/140‑1 (MQ=255)                                                                                                                                aaaaTGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATc                           >  1:563717/1‑140 (MQ=255)                                                                                                                                  aaTGTT‑GTGGAAATCACGTAAAATAATGAAAGGAATCGTTTGAAAACATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGt                <  2:483338/149‑1 (MQ=11)                                                                                                                                      tt‑gtGCTAATCGGGTGGAACAATCAGAGGATTCTTGTGAAATCATTGTAGTAATCTCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGa                     <  1:91761/140‑1 (MQ=11)                                                                                                                                         gtgGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaataa                                                                                    >  2:511721/1‑75 (MQ=40)                                                                                                                                         gtgGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAAt                   >  1:862181/1‑140 (MQ=37)                                                                                                                                           ggAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGGGGCCTCAAATGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCg                 >  1:231848/1‑140 (MQ=11)                                                                                                                                            aaaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaaa                                                                 <  2:478976/90‑1 (MQ=18)                                                                                                                                              aaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTGTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGttt              >  1:817501/1‑140 (MQ=17)                                                                                                                                                tCGCGGGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCCCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGa            <  1:367842/140‑1 (MQ=17)                                                                                                                                                 cgcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgta  <  2:349113/149‑1 (MQ=31)                                                                                                                                                   |                                                                                                                                                   TATCGTTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTT‑GTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTA  >  CP000730/52350‑52641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.