New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	52495 =	66 (0.890)	120 (1.640) +T	6/282	8.5	62.7%	intergenic (+105/‑568)	USA300HOU_0043/USA300HOU_0044	hypothetical membrane protein/possible transcriptional regulator
	?	CP000730	= 52988	78 (1.060)					intergenic (+598/‑75)	USA300HOU_0043/USA300HOU_0044	hypothetical membrane protein/possible transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.

CGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGGTC  >  CP000730/52845‑53130                                                                                                                                                |                                                                                                                                               cGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTg                                                                                                                                           <  2:7293/149‑1 (MQ=32)     tGAAATCATCGTAGTAATCGCGCGAAATTCGCGTGAAATAATCAGAGGATTCGTTTGAGATCATCGTAGTAATCGTGCGAAAATCGCGTGAAATAATAAGAGGAATGGTTTGAAATCATCGTAGTAGTCGCGGGAAAATAGGGTGaaaa                                                                                                                                       >  2:111258/1‑148 (MQ=11)      gAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCTCGTGAAATAATCAGAGGAATGGTTTGAAATCATCATAGAAATCGCGCGAAAATCGTGGGAAGTa                                                                                                                                      >  2:433559/1‑149 (MQ=11)       aaaTCATCGTAGTAATCGCGCGAAAGTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCTCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATcgc                                                                                                                                              <  1:962605/140‑1 (MQ=17)        aaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGGGGGATCGTTTGAAAACATCGTAGTAATCGCGCGAAAATCGCGGGaagaact                                                                                                                                    >  2:553618/1‑144 (MQ=11)        aaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATcgcg                                                                                                                                             <  1:823879/140‑1 (MQ=32)         atcatcGTAGTAATCGCGCGAAAATCGCGTGAAATACTTGGGGGATTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGAGTGAAATAACCAGATGAATCGTTTGACATCATGATTGTAATTGCGAGAAAATCGCGTGAAATAGTa                                                                                                                                   >  2:217470/1‑149 (MQ=11)              cGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAAt                                                                                                                                       <  1:966262/140‑1 (MQ=32)                   taATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACgg                                                                                                                         <  2:601317/149‑1 (MQ=255)                   taATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAAACGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACgg                                                                                                                         >  2:441054/1‑149 (MQ=255)                   taATCCCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTAt                                                                                                                                  <  1:395568/140‑1 (MQ=25)                     aTCGCGCGAAAATCCCGTGAAATAATCAGGGGAACCGTTTGAAATCAACGTAGTAATCGCGCGAAAATCGCGTGAAATAAGCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATgg                                                                                                                                <  1:560984/140‑1 (MQ=11)                      tCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGt                                                                                                                               <  1:331801/140‑1 (MQ=38)                         cgcgAAAATCGCGTGAAATAATCACAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGAGTGAAATACTATGGTAGa                                                                                                                            >  1:644472/1‑140 (MQ=255)                            gAAAATCACCGGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACgg                                                                                                                         <  1:878382/140‑1 (MQ=255)                                aTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTg                                                                                                                     <  1:858022/140‑1 (MQ=255)                                aTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTg                                                                                                                     <  1:693737/140‑1 (MQ=255)                                     tgaaaaTAATCAGAGGAATCGGTTGAAATCATCGTAGGAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTaa                                                                                                                <  1:52095/137‑1 (MQ=255)                                      tgcaataatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTaaa                                                                                                               <  1:678602/137‑1 (MQ=255)                                      tGAAATAATCAGGGGAATGGTTTGAAATGATCGTAGTGATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATAATCGCAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTaaa                                                                                                               <  1:86843/140‑1 (MQ=17)                                          aaaatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTaa                                                                                                           <  1:389832/138‑1 (MQ=255)                                           taatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAAt                                                                                                          <  1:895699/140‑1 (MQ=255)                                           taatCAGAGGAATCGTTTGAAAGCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAAt                                                                                                          <  1:649758/140‑1 (MQ=255)                                           taaaCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAAt                                                                                                          <  1:423102/140‑1 (MQ=255)                                             atCAGAGGAATCATATTAAATCAACATAAGAATCGCGCAAAAATCGCGTGAAATAATCAGAGGAACCGTTTGAAATCAGCTTAGTCATCGCGCGAAAATCGCGTGAAATCCTATTGTAGACGGTTTGAGTAAATTAATgg                                                                                                        <  1:439755/140‑1 (MQ=17)                                              tCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCATAGTAATCGTTTGAAATCATCGTAGTAATCGCTCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTaa                                                                                              >  2:150979/1‑149 (MQ=255)                                              tCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGa                                                                                                       <  1:493728/140‑1 (MQ=255)                                                aggggAATCGTTTGACATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGt                                                                                                     <  1:595843/137‑1 (MQ=255)                                                  agGAATCGTTTGAAATCATCGTAGTAATCCGCCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTAt                                                                                                   <  1:149143/140‑1 (MQ=255)                                                   ggAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTAtt                                                                                                  >  1:371743/1‑140 (MQ=255)                                                   ggAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTAtt                                                                                                  <  1:695808/140‑1 (MQ=255)                                                      atcggatggaaTCAGCGGAGTAATCGCGCGAAAATCGCGTGAAATAATCAGGGGAATCGTTTGAAATCATCGTAGTAAGCGCGCGAAAATCGCGTGAAAGACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTa                                                                                               <  1:442970/131‑1 (MQ=18)                                                          tttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAatat                                                                                           <  1:719489/140‑1 (MQ=255)                                                          tttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAatat                                                                                           <  1:359027/140‑1 (MQ=255)                                                          tttGAAATCATCGTAGTAAACGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAatat                                                                                           <  1:886506/140‑1 (MQ=255)                                                            tGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTgg                                                                                <  2:324412/149‑1 (MQ=255)                                                                       tagtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTggag                                                                              >  1:981432/1‑140 (MQ=255)                                                                         gtaAGCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTggagga                                                                            <  1:682325/140‑1 (MQ=255)                                                                          taATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGaa                                                                           <  1:134654/140‑1 (MQ=255)                                                                             tCGCGCCAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGcttg                                                               <  2:521924/149‑4 (MQ=255)                                                                             acggccgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATa                                                               <  2:500028/144‑1 (MQ=255)                                                                               gtgctgaaagtgagTGAAATAAACAGAAGAAACGTTTGAAATCATCGTAGTAATCGCGCGAAAAACGCGGGAAATACCATGGTAGGCGGTTGGAGTAAATTAATGGAGTATTTTAATATTTAGGGTTTGGAGGAAGTGCGTTGCATaga                                                             <  2:377412/136‑1 (MQ=25)                                                                               gcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATaga                                                             <  2:463392/149‑1 (MQ=255)                                                                                cgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATagag                                                            >  2:464472/1‑149 (MQ=255)                                                                                  caaaaaTCACGTGGAAACAGCAGAGGAATCGTTTGAAATCATCGTAGTAACCGCGCGAAAAACGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTg                                                                   <  1:119607/138‑1 (MQ=37)                                                                                    aaaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCa                                                                 <  1:419890/140‑1 (MQ=255)                                                                                    aaaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCa                                                                 <  1:686156/140‑1 (MQ=255)                                                                                        tCGCGTGAAATAATCAGGGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATaga                                                             <  1:884514/140‑1 (MQ=255)                                                                                        tCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATTGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATaga                                                             <  1:684259/140‑1 (MQ=255)                                                                                         cgagTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAat                                                   <  2:264652/146‑1 (MQ=255)                                                                                          gcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAgaga                                                           <  1:696484/140‑1 (MQ=255)                                                                                          gcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAACCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAgaga                                                           <  1:889174/140‑1 (MQ=255)                                                                                          gcgTGAAATAATCAGAAGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAgaga                                                           <  1:14312/140‑1 (MQ=255)                                                                                            gTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGaaa                                                         <  1:367848/140‑1 (MQ=255)                                                                                            gTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGaaa                                                         <  1:732163/140‑1 (MQ=255)                                                                                               aaaTAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTGGACGGGTTGAGTAAATTAATGGAGTATTGTAATATTTATGGTTTGGAGGAATTACGTTGCATAAGGAAAGTAaataaataa                                             >  2:278549/1‑148 (MQ=25)                                                                                               aaaTAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATag                                             >  2:35101/1‑149 (MQ=255)                                                                                               aaaTAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATag                                             >  2:159400/1‑149 (MQ=255)                                                                                                 agaagcAGAGGAATCGTTTGAAACCAACGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTaaa                                                    <  1:672467/135‑1 (MQ=255)                                                                                                         agGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAGTATATaga                                            >  1:676627/1‑140 (MQ=255)                                                                                                         agGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATaga                                            >  1:115454/1‑140 (MQ=255)                                                                                                             aTCGTTTGAAATCATCGTAGTAAGCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGtat                                        <  1:435703/140‑1 (MQ=255)                                                                                                               cGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACg                             <  2:467295/149‑1 (MQ=255)                                                                                                               cGTTTGAAATCATCGGAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACg                             <  2:204083/149‑1 (MQ=255)                                                                                                                 tttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGa                                    <  1:499068/140‑1 (MQ=255)                                                                                                                  ttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAGATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGaaa                          >  2:346689/1‑149 (MQ=255)                                                                                                                           tcGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATTGAGTATAAGAAATCACGaaa                          <  1:613386/140‑1 (MQ=255)                                                                                                                             gtagtaATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAg                        <  1:223339/140‑1 (MQ=255)                                                                                                                                 taATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGAtt                    <  1:150431/140‑1 (MQ=255)                                                                                                                                     cgcgcgAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCt                <  1:928143/140‑1 (MQ=255)                                                                                                                                      gcgcgAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGTGGATTCTAAAATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTa               <  1:231646/140‑1 (MQ=255)                                                                                                                                         cgAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTACATATATAGAGTATAAGAAATCACGAAAAGAATTATATaaga            >  1:71344/1‑138 (MQ=255)                                                                                                                                          gAAAATCGCGTGAACTACTATGGTAGACGGTTTGAGTAAATTCATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAACGTAAATATATAGAGTATAAGAAATCTCGAAAAGGATTATCTAATGa           <  1:710823/140‑1 (MQ=255)                                                                                                                                          gAAAATCGCGTGAAATTCTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGGTc  <  2:267296/149‑1 (MQ=255)                                                                                                                                          gAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGa           <  1:287493/140‑1 (MQ=255)                                                                                                                                              aTCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGATTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATAtt       <  1:352262/140‑1 (MQ=255)                                                                                                                                                cgcgTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAGTTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGaaaa                         <  2:481928/120‑1 (MQ=255)                                                                                                                                                cgcgTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTg     >  1:321815/1‑140 (MQ=255)                                                                                                                                                cgcgTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCAAATTCTAtttt     >  1:791859/1‑139 (MQ=255)                                                                                                                                                |                                                                                                                                               CGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGGTC  >  CP000730/52845‑53130

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.