New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 26029450 (0.780)3 (0.050) 3/238 NT 6.0% intergenic (‑408/‑165) USA300HOU_0232/pfl iron (Fe3+) ABC superfamily ATP binding cassette transporter, membrane/binding protein/formate C‑acetyltransferase
?CP000730 = 260312 49 (0.830)intergenic (‑426/‑147) USA300HOU_0232/pfl iron (Fe3+) ABC superfamily ATP binding cassette transporter, membrane/binding protein/formate C‑acetyltransferase

TTTAATCCAGTCTCTTCATATATAAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/260146‑260294
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgtgtaacagTAATATGCTAATTGC‑‑ATTCTGTTACACAACAGTTATAATGTTCACTATTTTCATTGCTTTAAAAGTTAATTTAGGAGTATATATTTGTTTATAAAAAATGATTGTTGATAAGCGTTAAATCAACACTTAGAAAGATTT  <  CP000730/260312‑260175
                                                                                                                                                                                                                                                                                                   
ttgAATCCAGTCTCTTCATATATAAAAGTAAATCTTTCTAAGTGTTCATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTG                                                                                                                                                        <  2:643948/138‑1
  TAATCCAGTCTCTTCATATATAAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATAGTCCTAAGTTAACGTTGAAAGCAATGAAAATAGTGAACATTATAACTGTTGTG                                                                                                                                                      <  2:755168/141‑1
   AATCCAGTCTCTTCATATATAAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGT                                                                                                                                                     <  1:558946/141‑1
    ATCCAGTCTCTTCATATATAAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTA                                                                                                                                                    <  2:589/141‑1
     TCCAGTCTCTTCATATATAAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAA                                                                                                                                                   >  2:320335/1‑141
      CCAGTCTCTTCATATATAAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAAC                                                                                                                                                  <  1:700220/141‑1
        AGTCTCTTCATATATAAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG                                                                                                                                                <  1:660738/141‑1
        AGTCTCTTCATATATAAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG                                                                                                                                                <  2:652654/141‑1
                                        AGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGTAATATGCTAATTAC‑‑ATTCTGTTACACAACAG                                                                                                            >  2:381563/1‑141
                                                                                        TACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑‑AATGCAATTAGCATATTACTGTTACACAACAGTTATAATGTTCACTATTTTCATTGCTTTAAAAGTTAATTTAGGAGTA                                                             <  2:629436/140‑1
                                                                                        TACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑‑AATGCAATTAGCATATTACTGTTACACAACAGTTATAATGTTCACTATTTTCATTGCTTTAAAAGTTAATTTAGGAGTA                                                             >  1:629436/1‑140
                                                                                                                                           TGTGTAACAGTAATATGCTAATTGC‑‑ATTCTGTTACACAACAGTTATAATGTTCACTATTTTCATTGCTTTAAAAGTTAATTTAGGAGTATATATTTGTTTATAAAAAATGATTGTTGATAAGCGTTAAATCAACACTTAGA         >  2:462321/1‑141
                                                                                                                                           TGTGTAACAGTAATATGCTAATTGC‑‑ATTCTGTTACACAACAGTTATAATGTTCACTATTTTCATTGCTTTAAAAGTTAATTTAGGAGTATATATTTGTTTATAAAAAATGATTGTTGATAAGCGTTAAATCAACACTTAGA         >  2:462013/1‑141
                                                                                                                                             TGTAACAGTAATATGCTAATTGC‑‑ATTCTGTTACACAACAGTTATAATGTTCACTATTTTCATTGCTTTAAAAGTTAATTTAGGAGTATATATTTGTTTATAAAAAATGATTGTTGATAAGCGTTAAATCAACACTTAGAAA       >  1:461531/1‑141
                                                                                                                                                 ACATTAATATTCTAATTGC‑‑ATTCTGTTACACAACAGTTATAATGTTCACTATTTTCATTGCTTTAAAAGTTAATTTAGGAGTATATATTTGTTTATAAAAAATGATTGTTGATAAGCGTTAAATCAACACTTAGAAAGATT   <  1:275238/141‑1
                                                                                                                                                 ACAGTAATATGCTAATTGC‑‑ATTCTGTTACACAACAGTTATAATGTTCACTATTTTCATTGCTTTAAAAGTTAATTTAGGAGTATATATTTGTTTATAAAAAATGATTGTTGATAAGCGTTAAATCAACACTTAGAAAGATT   >  1:505311/1‑141
                                                                                                                                                  CAGTAATATGCTAATTGC‑‑ATTCTGTTACACAACAGTTATAATGTTCACTATTTTCATTGCTTTAAAAGTTAATTTAGGAGTATATATTTGTTTATAAAAAATGATTGTTGATAAGCGTTAAATCAACACTTAGAAAGATTT  >  1:568920/1‑141
                                                                                                                                                                                                                                                                                                   
TTTAATCCAGTCTCTTCATATATAAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/260146‑260294
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgtgtaacagTAATATGCTAATTGC‑‑ATTCTGTTACACAACAGTTATAATGTTCACTATTTTCATTGCTTTAAAAGTTAATTTAGGAGTATATATTTGTTTATAAAAAATGATTGTTGATAAGCGTTAAATCAACACTTAGAAAGATTT  <  CP000730/260312‑260175

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.